NucleosomeDB 8WHA

Exp. Method	EM
Resolution, Å	4.05
Release Date	2024-04-17
Update Date	2024-04-17
Authors	Liu, Y., Zhang, Z., Hu, H., Chen, W., Zhang, F., Wang, Q., Wang, C., Yan, K., Du, J.
Publication	PMID: 38413824
doi	10.1038/s41477-024-01640-z
RCSB PDB	8WHA
EMDB	EMD-37537
Q-score	0.306

	Side	Chain	HistoneDB Variant	Taxa	UID
H3	Proximal	E	canonical H3	Arabidopsis thaliana	P59226
H3	Distal	A	canonical H3	Arabidopsis thaliana	P59226
H4	Proximal	B	canonical H4	Arabidopsis thaliana	P59259
H4	Distal	F	canonical H4	Arabidopsis thaliana	P59259
H2A	Proximal	G	canonical H2A	Arabidopsis thaliana	Q9LD28
H2A	Distal	C	canonical H2A	Arabidopsis thaliana	Q9LD28
H2B	Proximal	H	canonical H2B	Arabidopsis thaliana	O23629
H2B	Distal	D	canonical H2B	Arabidopsis thaliana	O23629

Chain	Name	UID
K	ATP-dependent DNA helicase DDM1	Q9XFH4
L	ATP-dependent DNA helicase DDM1	Q9XFH4

Chain	Variant	Length
I	601	142
J	601	142

H2A

H2B

DNA

Other

Orthographic Superimpose 1KX5 Show axes

X - Y

X - Z

Z - Y

3DNA

Relative Twist

Sequence on X-axis is numbered relative to the dyad base pair.

H3d chain A

H4p chain B

H2Ad chain C

H2Bd chain D

H3p chain E

H4d chain F

H2Ap chain G

H2Bp chain H

DNA top chain I, bot chain J

Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.

8WHA