NucleosomeDB: browse

	PDBID	Method	Resolution	Release Date	NLP types	# NLPs	H3	H4	H2A	H2B	H1	Dna variant	Dna length	Title	Authors	DOI	PMID	H3 taxa	H4 taxa	H2A taxa	H2B taxa	H1 taxa	Release Year	Interactors	Interactor categories	Interactor UIDS	Histone UIDS	Q-score
0	5NL0	X-ray	5.40	2017-05-17	octamer, hemisome	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.0-B	601L	193	Crystal structure of a 197-bp palindromic 601L nucleosome in complex with linker histone H1	Bednar, J., Garcia-Saez, I., Boopathi, R., Cutter, A.R., Papai, G., Reymer, A., Syed, S.H., Lone, I.N., Tonchev, O., Crucifix, C., Menoni, H., Papin, C., Skoufias, D.A., Kurumizaka, H., Lavery, R., Hamiche, A., Hayes, J.J., Schultz, P., Angelov, D., Petosa, C., Dimitrov, S.	10.1016/j.molcel.2017.04.012	28475873	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis	2017				P02281, P06897, P62799, P22844, P84233	-
1	7XVM	X-ray	2.84	2023-05-24	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H5	601L	169	Crystal Structure of Nucleosome-H5 Linker Histone Assembly (sticky-169a DNA fragment)	Adhireksan, Z., Qiuye, B., Lee, P.L., Sharma, D., Padavattan, S., Davey, C.A.		0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Gallus gallus	2023				P06899, P04908, P68431, P62805, P02259	-
2	6LA2	X-ray	3.89	2021-02-17	octamer, octamer, octamer, octamer	4	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.0	601_modified	343	343 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0	Adhireksan, Z., Sharma, D., Lee, P.L., Bao, Q., Padavattan, S., Shum, W.K., Davey, G.E., Davey, C.A.	10.1093/nar/gkab070	33590100	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2021				P06899, P07305, P04908, P68431, P62805	-
3	6LA8	X-ray	3.40	2020-10-07	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.0	601_modified	349	349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0	Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.	10.1038/s41467-020-18533-2	32958761	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2020				P06899, P07305, P04908, P68431, P62805	-
4	6LA9	X-ray	3.70	2020-10-07	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.0	601_modified	349	349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0 (high cryoprotectant)	Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.	10.1038/s41467-020-18533-2	32958761	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2020				P06899, P07305, P04908, P68431, P62805	-
5	6LAB	X-ray	3.20	2021-02-17	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.0	601L	169	169 bp nucleosome, harboring cohesive DNA termini, assembled with linker histone H1.0	Adhireksan, Z., Sharma, D., Lee, P.L., Bao, Q., Padavattan, S., Shum, W.K., Davey, G.E., Davey, C.A.	10.1093/nar/gkab070	33590100	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2021				P06899, P07305, P04908, P68431, P62805	-
6	7COW	X-ray	2.86	2021-08-11	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.0	601_modified	353	353 bp di-nucleosome harboring cohesive DNA termini with linker histone H1.0	Adhireksan, Z., Sharma, D., Lee, P.L., Bao, Q., Padavattan, S., Shum, W.K., Davey, G.E., Davey, C.A.	10.1093/nar/gkab070	33590100	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2021				P06899, P07305, P04908, P68431, P62805	-
7	7DBP	EM	4.50	2020-12-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.0	601	175	Linker histone defines structure and self-association behaviour of the 177 bp human chromosome	Wang, S., Vogirala, V.K., Soman, A., Berezhnoy, N.V., Liu, Z.B., Wong, A.S.W., Korolev, N., Su, C.J., Sandin, S., Nordenskiold, L.	10.1038/s41598-020-79654-8	33432055	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2020				P07305, O60814, P04908, P68431, P62805	0.246
8	7K5X	EM	2.93	2020-11-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.0	601	197	Cryo-EM structure of a chromatosome containing human linker histone H1.0	Zhou, B.R., Feng, H., Kale, S., Fox, T., Khant, H., de Val, N., Ghirlando, R., Panchenko, A.R., Bai, Y.	10.1016/j.molcel.2020.10.038	33238161	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2020	scFv20			P06899, P07305, P04908, P68431, P62805	0.489
9	7XX6	X-ray	3.39	2023-05-31	octamer, octamer, octamer, octamer	4	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.0	601L	169	Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169a DNA fragment)	Adhireksan, Z., Qiuye, B., Lee, P.L., Sharma, D., Padavattan, S., Davey, C.A.		0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2023				P06899, P07305, P04908, P68431, P62805	-
10	4QLC	X-ray	3.50	2015-07-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H5	601	166	Crystal structure of chromatosome at 3.5 angstrom resolution	Zhou, B.R., Jiang, J., Feng, H., Ghirlando, R., Xiao, T.S., Bai, Y.	10.1016/j.molcel.2015.06.025	26212454	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Gallus gallus	2015				P02283, P84051, P02299, P02259, P84040	-
11	5WCU	X-ray	5.53	2018-10-31	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H5	601	164	Crystal structure of 167 bp nucleosome bound to the globular domain of linker histone H5	Zhou, B.R., Jiang, J., Ghirlando, R., Norouzi, D., Sathish Yadav, K.N., Feng, H., Wang, R., Zhang, P., Zhurkin, V., Bai, Y.	10.1016/j.jmb.2018.06.020	29959925	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Gallus gallus	2018				P02283, P84051, P02299, P02259, P84040	-
12	7K5Y	EM	2.76	2020-11-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	197	Cryo-EM structure of a chromatosome containing human linker histone H1.4	Zhou, B.R., Feng, H., Kale, S., Fox, T., Khant, H., de Val, N., Ghirlando, R., Panchenko, A.R., Bai, Y.	10.1016/j.molcel.2020.10.038	33238161	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2020	scFv20			P06899, P04908, P68431, P10412, P62805	0.527
13	7PET	EM	9.50	2022-08-03	octamer, octamer, octamer, octamer	4	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	698	The 4x177 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.105
14	7PEU	EM	7.20	2022-08-03	octamer, octamer, octamer	3	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	520	Trinucleosome of the 4x177 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.138
15	7PEX	EM	5.10	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	177	Nucleosome 2 of the 4x177 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.267
16	7PEZ	EM	7.90	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	182	Nucleosome 4 of the 4x177 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.203
17	7PF0	EM	11.00	2022-08-03	octamer, octamer, octamer	3	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	541	Trinucleosome of the 4x177 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.101
18	7PF2	EM	5.10	2022-08-03	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	339	Nucleosome stack of the 4x187 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.217
19	7PF3	EM	4.00	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	167	Nucleosome 4 of the 4x187 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.351
20	7PF5	EM	3.80	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	167	Nucleosome 2 of the 4x187 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.329
21	7PF6	EM	4.00	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	167	Nucleosome 1 of the 4x187 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.27
22	7PFA	EM	9.70	2022-08-03	octamer, octamer, octamer	3	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	561	Trinucleosome of the 4x197 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.084
23	7PFC	EM	6.40	2022-08-03	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	344	Nucleosome stack of the 4x197 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.177
24	7PFD	EM	4.40	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	172	Nucleosome 1 of the 4x197 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.208
25	7PFE	EM	4.40	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	177	Nucleosome 2 of the 4x197 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.302
26	7PFT	EM	9.80	2022-08-03	octamer, octamer, octamer	3	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	591	Trinucleosome of the 4x207 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.109
27	7PFU	EM	5.00	2022-08-03	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	354	Nucleosome stack of the 4x207 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.236
28	7PFV	EM	4.40	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	177	Nucleosome 1 of the 4x207 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.268
29	7PFW	EM	5.20	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	167	Nucleosome 2 of the 4x207 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.264
30	7PFX	EM	4.30	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	177	Nucleosome 3 of the 4x207 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022				Q71DI3, O60814, P04908, P10412, P62805	0.269
31	8H1T	EM	3.00	2023-02-01	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	167	Cryo-EM structure of BAP1-ASXL1 bound to chromatosome	Ge, W., Yu, C., Li, J., Yu, Z., Li, X., Zhang, Y., Liu, C.P., Li, Y., Tian, C., Zhang, X., Li, G., Zhu, B., Xu, R.M.	10.1038/s41586-023-05841-y	36991118	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2023	Ubiquitin carboxyl-terminal hydrolase BAP1, Ubiquitin, Polycomb group protein ASXL1	Histone PTM erasers, Ubiquitin, Polycomb, Histone_deubiquitination_H2AK119, Transcription-associated	Q92560, P0CG47, Q8IXJ9	Q16778, P20671, P68431, P10412, P62805	0.435
32	8H0V	EM	3.80	2022-12-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.2	601	201	RNA polymerase II transcribing a chromatosome (type I)	Hirano, R., Ehara, H., Kujirai, T., Uejima, T., Takizawa, Y., Sekine, S.I., Kurumizaka, H.	10.1038/s41467-022-35003-z	36435862	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha	Transcription-associated, RNA polymerases	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1	P06899, P04908, P68431, P16403, P62805	0.228
33	8H0W	EM	4.60	2022-12-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.2	601	196	RNA polymerase II transcribing a chromatosome (type II)	Hirano, R., Ehara, H., Kujirai, T., Uejima, T., Takizawa, Y., Sekine, S.I., Kurumizaka, H.	10.1038/s41467-022-35003-z	36435862	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2022	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha	Transcription-associated, RNA polymerases	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1	P06899, P04908, P68431, P16403, P62805	0.16
34	7XX5	X-ray	3.19	2023-05-31	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	generic_H1	601L	169	Crystal Structure of Nucleosome-H1.3 Linker Histone Assembly (sticky-169a DNA fragment)	Adhireksan, Z., Qiuye, B., Lee, P.L., Sharma, D., Padavattan, S., Davey, C.A.		0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2023				P06899, P16402, P04908, P68431, P62805	-
35	7K63	EM	3.03	2020-11-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.4	601	197	Cryo-EM structure of a chromatosome containing chimeric linker histone gH1.10-ncH1.4	Zhou, B.R., Feng, H., Kale, S., Fox, T., Khant, H., de Val, N., Ghirlando, R., Panchenko, A.R., Bai, Y.	10.1016/j.molcel.2020.10.038	33238161	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2020	scFv20			P06899, P04908, P68431, P10412, P62805	0.492
36	6L9Z	X-ray	2.50	2021-02-17	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.10	601_modified	338	338 bp di-nucleosome assembled with linker histone H1.X	Adhireksan, Z., Sharma, D., Lee, P.L., Bao, Q., Padavattan, S., Shum, W.K., Davey, G.E., Davey, C.A.	10.1093/nar/gkab070	33590100	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2021				P06899, P04908, P68431, P62805, Q92522	-
37	7K60	EM	3.12	2020-11-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.10	601	197	Cryo-EM structure of a chromatosome containing human linker histone H1.10	Zhou, B.R., Feng, H., Kale, S., Fox, T., Khant, H., de Val, N., Ghirlando, R., Panchenko, A.R., Bai, Y.	10.1016/j.molcel.2020.10.038	33238161	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2020	scFv20			P06899, P04908, P68431, P62805, Q92522	0.435
38	8YTI	X-ray	2.70	2024-04-03	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.10	601L	169	Crystal Structure of Nucleosome-H1x Linker Histone Assembly (sticky-169a DNA fragment)	Adhireksan, Z., Sharma, D., Qiuye, B., Lee, P.L., Padavattan, S., Davey, C.A.		0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens	2024				P06899, P04908, P68431, P62805, Q92522	-
39	7KBF	EM	4.42	2021-09-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B	H1.8	601L	172	H1.8 bound nucleosome isolated from metaphase chromosome in Xenopus egg extract (oligo fraction)	Arimura, Y., Shih, R.M., Froom, R., Funabiki, H.	10.1016/j.molcel.2021.08.010	34478647	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis	2021				P02281, Q6DKE3, P15308, P62799, P84233	0.29
40	3AV2	X-ray	2.80	2011-06-01	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The human nucleosome structure containing the histone variant H3.3	Tachiwana, H., Osakabe, A., Shiga, T., Miya, Y., Kimura, H., Kagawa, W., Kurumizaka, H.	10.1107/S0907444911014818	21636898	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P84243, P04908	-
41	3WTP	X-ray	2.67	2014-12-03	octamer	1	H3.3,cenH3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal Structure of the heterotypic nucleosome containing human CENP-A and H3.3	Arimura, Y., Shirayama, K., Horikoshi, N., Fujita, R., Taguchi, H., Kagawa, W., Fukagawa, T., Almouzni, G., Kurumizaka, H.	10.1038/srep07115	25408271	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2014				P06899, P84243, P04908, P49450, P62805	-
42	5B32	X-ray	2.35	2016-08-03	octamer	1	H3.3	canonical_H4	H2A.Z,canonical_H2A	canonical_H2B		alphasat_146	146	The crystal structure of the heterotypic H2AZ/H2A nucleosome with H3.3.	Horikoshi, N., Arimura, Y., Taguchi, H., Kurumizaka, H.	10.1098/rsob.160127	27358293	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2016				P06899, P0C0S5, P84243, P04908, P62805	-
43	5B33	X-ray	2.92	2016-08-03	octamer	1	H3.3	canonical_H4	H2A.Z	canonical_H2B		alphasat_146	146	The crystal structure of the H2AZ nucleosome with H3.3.	Horikoshi, N., Arimura, Y., Taguchi, H., Kurumizaka, H.	10.1098/rsob.160127	27358293	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2016				P62805, P06899, P84243, P0C0S5	-
44	5X7X	X-ray	2.18	2017-04-19	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The crystal structure of the nucleosome containing H3.3 at 2.18 angstrom resolution	Taguchi, H., Xie, Y., Horikoshi, N., Maehara, K., Harada, A., Nogami, J., Sato, K., Arimura, Y., Osakabe, A., Kujirai, T., Iwasaki, T., Semba, Y., Tachibana, T., Kimura, H., Ohkawa, Y., Kurumizaka, H.	10.1021/acs.biochem.6b01098	28374988	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2017				P62805, P06899, P84243, P04908	-
45	5XM0	X-ray	2.87	2018-03-07	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The mouse nucleosome structure containing H2A, H2B type3-A, H3.3, and H4	Harada, A., Maehara, K., Ono, Y., Taguchi, H., Yoshioka, K., Kitajima, Y., Xie, Y., Sato, Y., Iwasaki, T., Nogami, J., Okada, S., Komatsu, T., Semba, Y., Takemoto, T., Kimura, H., Kurumizaka, H., Ohkawa, Y.	10.1038/s41467-018-03845-1	29643389	Mus musculus	Mus musculus	Mus musculus	Mus musculus		2018				Q9D2U9, P84244, C0HKE1, P62806	-
46	6A5L	EM	5.60	2018-10-03	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	126	RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA	Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S.I., Kurumizaka, H.	10.1126/science.aau9904	30287617	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2018	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha	Transcription-associated, RNA polymerases	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1	P62805, P06899, P84243, P04908	0.182
47	6A5O	EM	9.90	2018-10-03	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	178	RNA polymerase II elongation complex stalled at SHL(-6) of the nucleosome	Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S.I., Kurumizaka, H.	10.1126/science.aau9904	30287617	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2018	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha	Transcription-associated, RNA polymerases	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1	P62805, P06899, P84243, P04908	0.083
48	6A5P	EM	7.00	2018-10-03	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	168	RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome	Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S.I., Kurumizaka, H.	10.1126/science.aau9904	30287617	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2018	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha	Transcription-associated, RNA polymerases	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1	P62805, P06899, P84243, P04908	0.138
49	6A5R	EM	8.70	2018-10-03	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	136	RNA polymerase II elongation complex stalled at SHL(-2) of the nucleosome	Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S.I., Kurumizaka, H.	10.1126/science.aau9904	30287617	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2018	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha	Transcription-associated, RNA polymerases	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1	P62805, P06899, P84243, P04908	0.11
50	6A5T	EM	6.70	2018-10-03	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	126	RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome	Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S.I., Kurumizaka, H.	10.1126/science.aau9904	30287617	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2018	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha	Transcription-associated, RNA polymerases	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1	P62805, P06899, P84243, P04908	0.151
51	6A5U	EM	7.60	2018-10-03	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	126	RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA, tilt conformation	Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S.I., Kurumizaka, H.	10.1126/science.aau9904	30287617	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2018	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha	Transcription-associated, RNA polymerases	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1	P62805, P06899, P84243, P04908	0.14
52	6INQ	EM	6.90	2019-04-03	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	125	RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA (+1 position)	Kujirai, T., Ehara, H., Fujino, Y., Shirouzu, M., Sekine, S., Kurumizaka, H.	10.1126/science.aau9904	30287617	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha	Transcription-associated, RNA polymerases	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1	P62805, P06899, P84243, P04908	0.149
53	6IR9	EM	3.80	2019-02-20	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	128	RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleosome	Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.I.	10.1126/science.aav8912	30733384	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Spt5	Transcription-associated, Transcription factors, RNA polymerases, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370	P62805, P06899, P84243, P04908	0.264
54	6J4W	EM	7.90	2019-02-20	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	171	RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-5) of the nucleosome	Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.I.	10.1126/science.aav8912	30733384	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Spt5	Transcription-associated, Transcription factors, RNA polymerases, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, F2QTN1, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370	P62805, P06899, P84243, P04908	0.123
55	6J4X	EM	4.30	2019-02-20	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	127	RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleosome (+1A)	Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.I.	10.1126/science.aav8912	30733384	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Protein that forms a complex with Spt4p	Transcription-associated, Transcription factors, RNA polymerases, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370	P62805, P06899, P84243, P04908	0.233
56	6J4Y	EM	4.30	2019-02-20	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	127	RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleosome (+1B)	Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.I.	10.1126/science.aav8912	30733384	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Protein that forms a complex with Spt4p	Transcription-associated, Transcription factors, RNA polymerases, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370	P62805, P06899, P84243, P04908	0.235
57	6J4Z	EM	4.10	2019-02-20	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	128	RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome	Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.I.	10.1126/science.aav8912	30733384	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor SPT4, Spt5	Transcription-associated, Transcription factors, RNA polymerases, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4R0E6, C4R370	P62805, P06899, P84243, P04908	0.244
58	6J50	EM	4.70	2019-02-20	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	128	RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome (tilted conformation)	Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.I.	10.1126/science.aav8912	30733384	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor SPT4, Protein that forms a complex with Spt4p	Transcription-associated, Transcription factors, RNA polymerases, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4R0E6, C4R370	P62805, P06899, P84243, P04908	0.195
59	6J51	EM	4.20	2019-02-20	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	127	RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome, weak Elf1 (+1 position)	Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.I.	10.1126/science.aav8912	30733384	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Protein that forms a complex with Spt4p	Transcription-associated, Transcription factors, RNA polymerases, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370	P62805, P06899, P84243, P04908	0.23
60	6LTJ	EM	3.70	2020-02-12	octamer	1	H3.3	canonical_H4	H2A.X	canonical_H2B		601	119	Structure of nucleosome-bound human BAF complex	He, S., Wu, Z., Tian, Y., Yu, Z., Yu, J., Wang, X., Li, J., Liu, B., Xu, Y.	10.1126/science.aaz9761	32001526	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Transcription activator BRG1, Actin-like protein 6A, Actin, cytoplasmic 1, AT-rich interactive domain-containing protein 1A, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, SWI/SNF complex subunit SMARCC2, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, Zinc finger protein ubi-d4	Transcription-associated, Chromatin remodelers, SWI/SNF	P51532, O96019, P60709, O14497, Q12824, Q8TAQ2, Q96GM5, Q969G3, Q92785	P02281, Q6PI79, P06897, P62799	0.007
61	6R0C	EM	4.20	2019-09-25	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		Human-D02	142	Human-D02 Nucleosome Core Particle with biotin-streptavidin label	Wilson, M.D., Renault, L., Maskell, D.P., Ghoneim, M., Pye, V.E., Nans, A., Rueda, D.S., Cherepanov, P., Costa, A.	10.1038/s41467-019-12007-w	31519882	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P62805, P0C0S8, P84243, P62807	0.373
62	6RNY	EM	3.90	2019-09-25	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		Human-D02	128	PFV intasome - nucleosome strand transfer complex	Wilson, M.D., Renault, L., Maskell, D.P., Ghoneim, M., Pye, V.E., Nans, A., Rueda, D.S., Cherepanov, P., Costa, A.	10.1038/s41467-019-12007-w	31519882	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	Integrase	Viral, DNA integration	P14350	P62805, P0C0S8, P84243, P62807	0.349
63	7WBV	EM	4.10	2023-07-05	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	159	RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-4) of the nucleosome	Osumi, K., Kujirai, T., Ehara, H., Ogasawara, M., Kinoshita, C., Saotome, M., Kagawa, W., Sekine, S.I., Takizawa, Y., Kurumizaka, H.	10.1016/j.jmb.2023.168130	37120012	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Transcription elongation factor SPT5	Transcription-associated, Transcription factors, RNA polymerases, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370	P62805, P06899, P84243, P04908	0.267
64	7WBW	EM	7.10	2023-07-05	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	154	RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3.5) of the nucleosome	Osumi, K., Kujirai, T., Ehara, H., Ogasawara, M., Kinoshita, C., Saotome, M., Kagawa, W., Sekine, S.I., Takizawa, Y., Kurumizaka, H.	10.1016/j.jmb.2023.168130	37120012	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Transcription elongation factor SPT5	Transcription-associated, Transcription factors, RNA polymerases, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370	P62805, P06899, P84243, P04908	0.137
65	7WBX	EM	4.00	2023-07-05	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	150	RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3) of the nucleosome	Osumi, K., Kujirai, T., Ehara, H., Ogasawara, M., Kinoshita, C., Saotome, M., Kagawa, W., Sekine, S.I., Takizawa, Y., Kurumizaka, H.	10.1016/j.jmb.2023.168130	37120012	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Transcription elongation factor SPT5	Transcription-associated, Transcription factors, RNA polymerases, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370	P62805, P06899, P84243, P04908	0.298
66	7XSE	EM	3.60	2022-09-07	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	134	RNA polymerase II elongation complex transcribing a nucleosome (EC42)	Ehara, H., Kujirai, T., Shirouzu, M., Kurumizaka, H., Sekine, S.I.	10.1126/science.abp9466	35981082	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Transcription elongation factor SPT5, Transcription elongation factor Spt6, Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II, Component of the Paf1p complex, RNAPII-associated chromatin remodeling Paf1 complex subunit, Leo1, RNAP II-associated protein, Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p	Transcription-associated, Transcription factors, RNA polymerases, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370, C4R7H2, C4R7L8, C4R6B2, F2QQ42, C4R3K1, C4R997, C4R1E6	P62805, P06899, P84243, P04908	0.238
67	7XSX	EM	3.80	2022-09-07	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	108	RNA polymerase II elongation complex transcribing a nucleosome (EC49)	Ehara, H., Kujirai, T., Shirouzu, M., Kurumizaka, H., Sekine, S.I.	10.1126/science.abp9466	35981082	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Transcription elongation factor SPT5, FACT complex subunit, FACT complex subunit POB3, Transcription elongation factor Spt6, Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II, Component of the Paf1p complex, RNAPII-associated chromatin remodeling Paf1 complex subunit, Leo1, RNAP II-associated protein, Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p	Histone chaperones, RNA polymerases, FACT, DNA repair, Transcription factors, DNA replication, Transcription-associated, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370, C4QYQ8, F2QNN8, C4R7H2, C4R7L8, C4R6B2, F2QQ42, C4R3K1, C4R997, C4R1E6	P62805, P06899, P84243, P04908	0.227
68	7XSZ	EM	3.40	2022-09-07	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B			155	RNA polymerase II elongation complex transcribing a nucleosome (EC115)	Ehara, H., Kujirai, T., Shirouzu, M., Kurumizaka, H., Sekine, S.I.	10.1126/science.abp9466	35981082	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Transcription elongation factor SPT5, Transcription elongation factor Spt6, Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II, Component of the Paf1p complex, RNAPII-associated chromatin remodeling Paf1 complex subunit, Leo1, RNAP II-associated protein, Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p	Transcription-associated, Transcription factors, RNA polymerases, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370, C4R7H2, C4R7L8, C4R6B2, F2QQ42, C4R3K1, C4R997, C4R1E6	P62805, P06899, P84243, P04908	0.248
69	7XT7	EM	4.20	2022-10-12	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	126	RNA polymerase II elongation complex transcribing a nucleosome (EC49B)	Ehara, H., Kujirai, T., Shirouzu, M., Kurumizaka, H., Sekine, S.I.	10.1126/science.abp9466	35981082	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Transcription elongation factor SPT5, FACT complex subunit, FACT complex subunit POB3, Transcription elongation factor Spt6, Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II, Component of the Paf1p complex, RNAPII-associated chromatin remodeling Paf1 complex subunit, Leo1, RNAP II-associated protein, Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p	Histone chaperones, RNA polymerases, FACT, DNA repair, Transcription factors, DNA replication, Transcription-associated, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370, F2QPX0, F2QNN8, C4R7H2, C4R7L8, C4R6B2, F2QQ42, C4R3K1, C4R997, C4R1E6	P62805, P06899, P84243, P04908	0.207
70	7XTD	EM	3.90	2022-09-07	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	123	RNA polymerase II elongation complex transcribing a nucleosome (EC58oct)	Ehara, H., Kujirai, T., Shirouzu, M., Kurumizaka, H., Sekine, S.I.	10.1126/science.abp9466	35981082	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Transcription elongation factor SPT5, FACT complex subunit, FACT complex subunit POB3, Transcription elongation factor Spt6, Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II, Component of the Paf1p complex, RNAPII-associated chromatin remodeling Paf1 complex subunit, Leo1, RNAP II-associated protein, Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p	Histone chaperones, RNA polymerases, FACT, DNA repair, Transcription factors, DNA replication, Transcription-associated, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370, C4QYQ8, F2QNN8, C4R7H2, C4R7L8, C4R6B2, F2QQ42, C4R3K1, C4R997, C4R1E6	P62805, P06899, P84243, P04908	0.221
71	7XTI	EM	3.90	2022-10-12	hexamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	85	RNA polymerase II elongation complex transcribing a nucleosome (EC58hex)	Ehara, H., Kujirai, T., Shirouzu, M., Kurumizaka, H., Sekine, S.I.	10.1126/science.abp9466	35981082	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Transcription elongation factor SPT5, FACT complex subunit, FACT complex subunit POB3, Transcription elongation factor Spt6, Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II, Component of the Paf1p complex, RNAPII-associated chromatin remodeling Paf1 complex subunit, Leo1, RNAP II-associated protein, Constituent of Paf1 complex with RNA polymerase II, Paf1p, Hpr1p, Ctr9, Leo1, Rtf1 and Ccr4p	Histone chaperones, RNA polymerases, FACT, DNA repair, Transcription factors, DNA replication, Transcription-associated, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370, C4QYQ8, F2QNN8, C4R7H2, C4R7L8, C4R6B2, F2QQ42, C4R3K1, C4R997, C4R1E6	P62805, P06899, P84243, P04908	0.223
72	8JH2	EM	5.70	2023-11-29	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	127	RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome	Akatsu, M., Ehara, H., Kujirai, T., Fujita, R., Ito, T., Osumi, K., Ogasawara, M., Takizawa, Y., Sekine, S.I., Kurumizaka, H.	10.1016/j.jbc.2023.105477	37981206	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, RNA polymerase subunit ABC27, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, Transcription elongation factor SPT4, Transcription elongation factor SPT5	Transcription-associated, Transcription factors, RNA polymerases, SPT4-SPT5 complex	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R0E6, C4R370	P62805, P06899, P84243, P04908	0.145
73	8JH3	EM	3.70	2023-11-29	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	159	RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome	Akatsu, M., Ehara, H., Kujirai, T., Fujita, R., Ito, T., Osumi, K., Ogasawara, M., Takizawa, Y., Sekine, S.I., Kurumizaka, H.	10.1016/j.jbc.2023.105477	37981206	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha	Transcription-associated, RNA polymerases	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1	P62805, P06899, P84243, P04908	0.255
74	8JH4	EM	3.20	2023-11-29	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	178	RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome	Akatsu, M., Ehara, H., Kujirai, T., Fujita, R., Ito, T., Osumi, K., Ogasawara, M., Takizawa, Y., Sekine, S.I., Kurumizaka, H.	10.1016/j.jbc.2023.105477	37981206	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha	Transcription-associated, RNA polymerases	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, F2QPE6, C4R009, C4R3Z5, F2QMI1	P62805, P06899, P84243, P04908	0.313
75	8PKI	EM	2.58	2024-02-28	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601	137	Cryo-EM structure of NR5A2-nucleosome complex SHL+5.5	Kobayashi, W., Sappler, A.H., Bollschweiler, D., Kummecke, M., Basquin, J., Arslantas, E.N., Ruangroengkulrith, S., Hornberger, R., Duderstadt, K., Tachibana, K.	10.1038/s41594-024-01239-0	38409506	Mus musculus	Mus musculus	Mus musculus	Mus musculus		2024	Nuclear receptor subfamily 5 group A member 2		O00482	Q6ZWY9, B2RVF0, P84244, P62806	0.572
76	8PKJ	EM	2.50	2024-02-28	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of the nucleosome containing Nr5a2 motif at SHL+5.5	Kobayashi, W., Sappler, A.H., Bollschweiler, D., Kummecke, M., Basquin, J., Arslantas, E.N., Ruangroengkulrith, S., Hornberger, R., Duderstadt, K., Tachibana, K.	10.1038/s41594-024-01239-0	38409506	Mus musculus	Mus musculus	Mus musculus	Mus musculus		2024				A0A7L1D652, A0A2J8S4Y0, A0A3Q2Z0K7, B2RVF0	0.6
77	1EQZ	X-ray	2.50	2000-04-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.5 A RESOLUTION	Harp, J.M., Hanson, B.L., Timm, D.E., Bunick, G.J.	10.1107/S0907444900011847	11092917	Gallus gallus	Gallus gallus	Gallus gallus	Gallus gallus		2000				P84229, P62801, P02263, P0C1H5	-
78	1U35	X-ray	3.00	2005-09-27	octamer	1	canonical_H3	canonical_H4	macroH2A	canonical_H2B		alphasat_146	145	Crystal structure of the nucleosome core particle containing the histone domain of macroH2A	Chakravarthy, S., Gundimella, S.K., Caron, C., Perche, P.Y., Pehrson, J.R., Khochbin, S., Luger, K.	10.1128/MCB.25.17.7616-7624.2005	16107708	Mus musculus	Mus musculus	Homo sapiens	Mus musculus		2005				Q9D2U9, P62806, P68433, O75367	-
79	2CV5	X-ray	2.50	2005-06-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal structure of human nucleosome core particle	Tsunaka, Y., Kajimura, N., Tate, S., Morikawa, K.	10.1093/nar/gki663	15951514	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2005				P62805, O60814, P04908, P68431	-
80	2F8N	X-ray	2.90	2006-05-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A,macroH2A	canonical_H2B		alphasat_146	145	2.9 Angstrom X-ray structure of hybrid macroH2A nucleosomes	Chakravarthy, S., Luger, K.		0	Xenopus laevis	Xenopus laevis	Mus musculus,Homo sapiens	Mus musculus,Xenopus laevis		2006				P02281, Q9D2U9, Q8CGP6, P62799, P84233, O75367	-
81	3AFA	X-ray	2.50	2010-05-26	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The human nucleosome structure	Tachiwana, H., Kagawa, W., Osakabe, A., Kawaguchi, K., Shiga, T., Hayashi-Takanaka, Y., Kimura, H., Kurumizaka, H.	10.1073/pnas.1003064107	20498094	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2010				P62805, P06899, P04908, P68431	-
82	3AV1	X-ray	2.50	2011-06-01	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The human nucleosome structure containing the histone variant H3.2	Tachiwana, H., Osakabe, A., Shiga, T., Miya, Y., Kimura, H., Kagawa, W., Kurumizaka, H.	10.1107/S0907444911014818	21636898	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P04908, Q71DI3	-
83	3AZI	X-ray	2.70	2011-09-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal Structure of Human Nucleosome Core Particle Containing H4K31Q mutation	Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1021/bi201021h	21812398	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P04908, P68431	-
84	3AZJ	X-ray	2.89	2011-09-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal Structure of Human Nucleosome Core Particle Containing H4K44Q mutation	Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1021/bi201021h	21812398	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P04908, P68431	-
85	3AZK	X-ray	3.20	2011-09-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal Structure of Human Nucleosome Core Particle Containing H4K59Q mutation	Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1021/bi201021h	21812398	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P04908, P68431	-
86	3AZL	X-ray	2.70	2011-09-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal Structure of Human Nucleosome Core Particle Containing H4K77Q mutation	Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1021/bi201021h	21812398	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P04908, P68431	-
87	3AZM	X-ray	2.89	2011-09-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal Structure of Human Nucleosome Core Particle Containing H4K79Q mutation	Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1021/bi201021h	21812398	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P04908, P68431	-
88	3AZN	X-ray	3.00	2011-09-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal Structure of Human Nucleosome Core Particle Containing H4K91Q mutation	Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1021/bi201021h	21812398	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P04908, P68431	-
89	3LEL	X-ray	2.95	2010-05-19	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_native	147	Structural Insight into the Sequence-Dependence of Nucleosome Positioning	Wu, B., Mohideen, K., Vasudevan, D., Davey, C.A.	10.1016/j.str.2010.01.015	20399189	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2010				P02281, P84233, P62799, Q6AZJ8	-
90	3W96	X-ray	3.00	2013-08-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal Structure of Human Nucleosome Core Particle lacking H2A N-terminal region	Iwasaki, W., Miya, Y., Horikoshi, N., Osakabe, A., Taguchi, H., Tachiwana, H., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1016/j.fob.2013.08.007	24251097	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2013				P62805, P06899, P04908, P68431	-
91	3W97	X-ray	3.20	2013-08-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal Structure of Human Nucleosome Core Particle lacking H2B N-terminal region	Iwasaki, W., Miya, Y., Horikoshi, N., Osakabe, A., Taguchi, H., Tachiwana, H., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1016/j.fob.2013.08.007	24251097	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2013				P62805, P06899, P04908, P68431	-
92	3W99	X-ray	3.00	2013-08-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal Structure of Human Nucleosome Core Particle lacking H4 N-terminal region	Iwasaki, W., Miya, Y., Horikoshi, N., Osakabe, A., Taguchi, H., Tachiwana, H., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1016/j.fob.2013.08.007	24251097	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2013				P62805, P06899, P04908, P68431	-
93	3WA9	X-ray	3.07	2013-12-18	octamer	1	canonical_H3	canonical_H4	H2A.Z	canonical_H2B		alphasat_146	146	The nucleosome containing human H2A.Z.1	Horikoshi, N., Sato, K., Shimada, K., Arimura, Y., Osakabe, A., Tachiwana, H., Hayashi-Takanaka, Y., Iwasaki, W., Kagawa, W., Harata, M., Kimura, H., Kurumizaka, H.	10.1107/S090744491302252X	24311584	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2013				P62805, P06899, P0C0S5, P68431	-
94	3WAA	X-ray	3.20	2013-12-18	octamer	1	canonical_H3	canonical_H4	H2A.Z	canonical_H2B		alphasat_146	146	The nucleosome containing human H2A.Z.2	Horikoshi, N., Sato, K., Shimada, K., Arimura, Y., Osakabe, A., Tachiwana, H., Hayashi-Takanaka, Y., Iwasaki, W., Kagawa, W., Harata, M., Kimura, H., Kurumizaka, H.	10.1107/S090744491302252X	24311584	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2013				P62805, P06899, P68431, Q71UI9	-
95	3WKJ	X-ray	2.80	2014-04-09	octamer	1	canonical_H3	canonical_H4	canonical_H2A	H2B.1		alphasat_146	145	The nucleosome containing human TSH2B	Urahama, T., Horikoshi, N., Osakabe, A., Tachiwana, H., Kurumizaka, H.	10.1107/S2053230X14004695	24699735	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2014				P62805, P04908, P68431, Q96A08	-
96	4KGC	X-ray	2.69	2014-03-26	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Nucleosome Core Particle Containing (ETA6-P-CYMENE)-(1, 2-ETHYLENEDIAMINE)-RUTHENIUM	Adhireksan, Z., Davey, G.E., Campomanes, P., Groessl, M., Clavel, C.M., Yu, H., Nazarov, A.A., Yeo, C.H., Ang, W.H., Droge, P., Rothlisberger, U., Dyson, P.J., Davey, C.A.	10.1038/ncomms4462	24637564	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2014				P02281, P84233, P62799, Q6AZJ8	-
97	4LD9	X-ray	3.31	2013-08-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	142	Crystal structure of the N-terminally acetylated BAH domain of Sir3 bound to the nucleosome core particle	Arnaudo, N., Fernandez, I.S., McLaughlin, S.H., Peak-Chew, S.Y., Rhodes, D., Martino, F.	10.1038/nsmb.2641	23934150	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2013	Regulatory protein SIR3	Transcription-associated	P06701	P02281, P84233, P06897, P62799	-
98	4YM5	X-ray	4.00	2015-12-02	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	143	Crystal structure of the human nucleosome containing 6-4PP (inside)	Osakabe, A., Tachiwana, H., Kagawa, W., Horikoshi, N., Matsumoto, S., Hasegawa, M., Matsumoto, N., Toga, T., Yamamoto, J., Hanaoka, F., Thoma, N.H., Sugasawa, K., Iwai, S., Kurumizaka, H.	10.1038/srep16330	26573481	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2015				P62805, P06899, P04908, P68431	-
99	4YM6	X-ray	3.51	2015-12-02	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	144	Crystal structure of the human nucleosome containing 6-4PP (outside)	Osakabe, A., Tachiwana, H., Kagawa, W., Horikoshi, N., Matsumoto, S., Hasegawa, M., Matsumoto, N., Toga, T., Yamamoto, J., Hanaoka, F., Thoma, N.H., Sugasawa, K., Iwai, S., Kurumizaka, H.	10.1038/srep16330	26573481	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2015				P62805, P06899, P04908, P68431	-
100	4ZUX	X-ray	3.82	2016-02-24	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	SAGA DUB module Ubp8/Sgf11/Sus1/Sgf73 bound to ubiqitinated nucleosome	Morgan, M.T., Haj-Yahya, M., Ringel, A.E., Bandi, P., Brik, A., Wolberger, C.	10.1126/science.aac5681	26912860	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2016	Ubiquitin carboxyl-terminal hydrolase 8, Transcription and mRNA export factor SUS1, SAGA-associated factor 11, Polyubiquitin-B, SAGA-associated factor 73	Histone PTM erasers, Ubiquitin, SAGA, Transcription-associated, Histone_deubiquitination	P50102, Q6WNK7, Q03067, P0CG47, P53165	P02281, P84233, P06897, P62799	-
101	5AV5	X-ray	2.40	2015-12-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	human nucleosome core particle	Wakamori, M., Fujii, Y., Suka, N., Shirouzu, M., Sakamoto, K., Umehara, T., Yokoyama, S.	10.1038/srep17204	26607036	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2015				P62805, P06899, P04908, P68431	-
102	5AV6	X-ray	2.20	2015-12-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	human nucleosome core particle	Wakamori, M., Fujii, Y., Suka, N., Shirouzu, M., Sakamoto, K., Umehara, T., Yokoyama, S.	10.1038/srep17204	26607036	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2015				P62805, P06899, P04908, P68431	-
103	5AV8	X-ray	2.20	2015-12-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	human nucleosome core particle	Wakamori, M., Fujii, Y., Suka, N., Shirouzu, M., Sakamoto, K., Umehara, T., Yokoyama, S.	10.1038/srep17204	26607036	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2015				P62805, P06899, P04908, P68431	-
104	5AV9	X-ray	2.20	2015-12-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	human nucleosome core particle	Wakamori, M., Fujii, Y., Suka, N., Shirouzu, M., Sakamoto, K., Umehara, T., Yokoyama, S.	10.1038/srep17204	26607036	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2015				P62805, P06899, P04908, P68431	-
105	5AVB	X-ray	2.40	2015-12-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	human nucleosome core particle	Wakamori, M., Fujii, Y., Suka, N., Shirouzu, M., Sakamoto, K., Umehara, T., Yokoyama, S.	10.1038/srep17204	26607036	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2015				P62805, P06899, P04908, P68431	-
106	5AVC	X-ray	2.40	2015-12-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	human nucleosome core particle	Wakamori, M., Fujii, Y., Suka, N., Shirouzu, M., Sakamoto, K., Umehara, T., Yokoyama, S.	10.1038/srep17204	26607036	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2015				P62805, P06899, P04908, P68431	-
107	5B0Z	X-ray	1.99	2016-01-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The crystal structure of the nucleosome containing H3.2, at 1.98 A resolution	Suzuki, Y., Horikoshi, N., Kato, D., Kurumizaka, H.	10.1016/j.bbrc.2015.12.041	26694698	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2016				P62805, P06899, P04908, Q71DI3	-
108	5B1M	X-ray	2.34	2017-02-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The mouse nucleosome structure containing H3.1	Ueda, J., Harada, A., Urahama, T., Machida, S., Maehara, K., Hada, M., Makino, Y., Nogami, J., Horikoshi, N., Osakabe, A., Taguchi, H., Tanaka, H., Tachiwana, H., Yao, T., Yamada, M., Iwamoto, T., Isotani, A., Ikawa, M., Tachibana, T., Okada, Y., Kimura, H., Ohkawa, Y., Kurumizaka, H., Yamagata, K.	10.1016/j.celrep.2016.12.065	28099840	Mus musculus	Mus musculus	Mus musculus	Mus musculus		2017				Q9D2U9, C0HKE1, P62806, P68433	-
109	5B24	X-ray	3.60	2016-03-02	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	144	The crystal structure of the nucleosome containing cyclobutane pyrimidine dimer	Horikoshi, N., Tachiwana, H., Kagawa, W., Osakabe, A., Matsumoto, S., Iwai, S., Sugasawa, K., Kurumizaka, H.	10.1016/j.bbrc.2016.01.170	26837048	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2016				P62805, P06899, P04908, P68431	-
110	5B2I	X-ray	3.00	2016-06-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146_4CpG	146	Human nucleosome containing CpG unmethylated DNA	Fujii, Y., Wakamori, M., Umehara, T., Yokoyama, S.	10.1002/2211-5463.12064	27419055	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2016				P62805, P06899, P04908, P68431	-
111	5B2J	X-ray	2.60	2016-06-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146_4CpG	142	Human nucleosome containing CpG methylated DNA	Fujii, Y., Wakamori, M., Umehara, T., Yokoyama, S.	10.1002/2211-5463.12064	27419055	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2016				P62805, P06899, P04908, P68431	-
112	5B31	X-ray	2.20	2016-08-03	octamer	1	canonical_H3	canonical_H4	H2A.Z,canonical_H2A	canonical_H2B		alphasat_146	146	The crystal structure of the heterotypic H2AZ/H2A nucleosome with H3.1.	Horikoshi, N., Arimura, Y., Taguchi, H., Kurumizaka, H.	10.1098/rsob.160127	27358293	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2016				P06899, P0C0S5, P04908, P68431, P62805	-
113	5CPI	X-ray	2.90	2015-10-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_2R	146	Nucleosome containing unmethylated Sat2R DNA	Osakabe, A., Adachi, F., Arimura, Y., Maehara, K., Ohkawa, Y., Kurumizaka, H.	10.1098/rsob.150128	26446621	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2015				P62805, P06899, P04908, P68431	-
114	5CPJ	X-ray	3.15	2015-10-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_2R	140	Nucleosome containing methylated Sat2R DNA	Osakabe, A., Adachi, F., Arimura, Y., Maehara, K., Ohkawa, Y., Kurumizaka, H.	10.1098/rsob.150128	26446621	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2015				P62805, P06899, P04908, P68431	-
115	5CPK	X-ray	2.63	2015-10-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_2L	139	Nucleosome containing methylated Sat2L DNA	Osakabe, A., Adachi, F., Arimura, Y., Maehara, K., Ohkawa, Y., Kurumizaka, H.	10.1098/rsob.150128	26446621	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2015				P62805, P06899, P04908, P68431	-
116	5E5A	X-ray	2.81	2016-02-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal structure of the chromatin-tethering domain of Human cytomegalovirus IE1 protein bound to the nucleosome core particle	Fang, Q., Chen, P., Wang, M., Fang, J., Yang, N., Li, G., Xu, R.M.	10.7554/eLife.11911	26812545	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2016	C-terminal domain of Regulatory protein IE1	Viral	P03169	P02281, P84233, P06897, P62799	-
117	5GSE	X-ray	3.14	2017-05-03	octamer, hexamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	244	Crystal structure of unusual nucleosome	Kato, D., Osakabe, A., Arimura, Y., Mizukami, Y., Horikoshi, N., Saikusa, K., Akashi, S., Nishimura, Y., Park, S.Y., Nogami, J., Maehara, K., Ohkawa, Y., Matsumoto, A., Kono, H., Inoue, R., Sugiyama, M., Kurumizaka, H.	10.1126/science.aak9867	28408607	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2017				P62805, P06899, P04908, P68431	-
118	5GTC	X-ray	2.70	2017-06-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal structure of complex between DMAP-SH conjugated with a Kaposi's sarcoma herpesvirus LANA peptide (5-15) and nucleosome core particle	Amamoto, Y., Aoi, Y., Nagashima, N., Suto, H., Yoshidome, D., Arimura, Y., Osakabe, A., Kato, D., Kurumizaka, H., Kawashima, S.A., Yamatsugu, K., Kanai, M.	10.1021/jacs.7b02138	28534629	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2017	LANA peptide	Viral	Q9QR71	P62805, P06899, P04908, P68431	-
119	5JRG	X-ray	2.50	2017-03-08	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	144	Crystal structure of the nucleosome containing the DNA with tetrahydrofuran (THF)	Osakabe, A., Arimura, Y., Matsumoto, S., Horikoshi, N., Sugasawa, K., Kurumizaka, H.	10.1038/srep41783	28139742	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2017				P62805, P06899, P04908, P68431	-
120	5KGF	EM	4.54	2016-07-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Structural model of 53BP1 bound to a ubiquitylated and methylated nucleosome, at 4.5 A resolution	Wilson, M.D., Benlekbir, S., Fradet-Turcotte, A., Sherker, A., Julien, J.P., McEwan, A., Noordermeer, S.M., Sicheri, F., Rubinstein, J.L., Durocher, D.	10.1038/nature18951	27462807	Xenopus laevis	Xenopus laevis	Homo sapiens	Homo sapiens		2016	Tumor suppressor p53-binding protein 1, Ubiquitin	Ubiquitin, DNA repair, Telomere-associated, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_methylation_H4K20_reader	Q12888, P0CG47	P0C0S8, P84233, P62807, P62799	0.301
121	5O9G	EM	4.80	2017-10-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	162	Structure of nucleosome-Chd1 complex	Farnung, L., Vos, S.M., Wigge, C., Cramer, P.	10.1038/nature24046	29019976	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017	Chromo domain-containing protein 1	Transcription-associated, CHD, Chromatin remodelers	P32657	P02281, P84233, P06897, P62799	0.018
122	5X0X	EM	3.97	2017-04-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Complex of Snf2-Nucleosome complex with Snf2 bound to position +6 of the nucleosome	Liu, X., Li, M., Xia, X., Li, X., Chen, Z.	10.1038/nature22036	28424519	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017	Transcription regulatory protein SNF2	Transcription-associated, Chromatin remodelers, SWI/SNF	P22082	P02281, P84233, P06897, P62799	0.372
123	5XF3	X-ray	2.60	2017-10-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (R,R-configuration)	Davey, G.E., Adhireksan, Z., Ma, Z., Riedel, T., Sharma, D., Padavattan, S., Rhodes, D., Ludwig, A., Sandin, S., Murray, B.S., Dyson, P.J., Davey, C.A.	10.1038/s41467-017-01680-4	29146919	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2017				P62805, P06899, P04908, P68431	-
124	5XF4	X-ray	2.87	2017-10-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (S,S-configuration)	Davey, G.E., Adhireksan, Z., Ma, Z., Riedel, T., Sharma, D., Padavattan, S., Rhodes, D., Ludwig, A., Sandin, S., Murray, B.S., Dyson, P.J., Davey, C.A.	10.1038/s41467-017-01680-4	29146919	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2017				P62805, P06899, P04908, P68431	-
125	5XF5	X-ray	2.82	2017-10-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (R,S-configuration)	Davey, G.E., Adhireksan, Z., Ma, Z., Riedel, T., Sharma, D., Padavattan, S., Rhodes, D., Ludwig, A., Sandin, S., Murray, B.S., Dyson, P.J., Davey, C.A.	10.1038/s41467-017-01680-4	29146919	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2017				P62805, P06899, P04908, P68431	-
126	5Y0C	X-ray	2.09	2018-07-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal Structure of the human nucleosome at 2.09 angstrom resolution	Arimura, Y., Ikura, M., Fujita, R., Noda, M., Kobayashi, W., Horikoshi, N., Sun, J., Shi, L., Kusakabe, M., Harata, M., Ohkawa, Y., Tashiro, S., Kimura, H., Ikura, T., Kurumizaka, H.	10.1093/nar/gky661	30053102	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2018				P62805, P06899, P04908, P68431	-
127	5Y0D	X-ray	1.99	2018-07-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal Structure of the human nucleosome containing the H2B E76K mutant	Arimura, Y., Ikura, M., Fujita, R., Noda, M., Kobayashi, W., Horikoshi, N., Sun, J., Shi, L., Kusakabe, M., Harata, M., Ohkawa, Y., Tashiro, S., Kimura, H., Ikura, T., Kurumizaka, H.	10.1093/nar/gky661	30053102	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2018				P62805, P06899, P04908, P68431	-
128	5Z30	X-ray	2.45	2018-07-18	octamer	1	canonical_H3	canonical_H4	H2A.Z	canonical_H2B		alphasat_146	146	The crystal structure of the nucleosome containing a cancer-associated histone H2A.Z R80C mutant	Arimura, Y., Ikura, M., Fujita, R., Noda, M., Kobayashi, W., Horikoshi, N., Sun, J., Shi, L., Kusakabe, M., Harata, M., Ohkawa, Y., Tashiro, S., Kimura, H., Ikura, T., Kurumizaka, H.	10.1093/nar/gky661	30053102	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2018				P62805, P06899, P0C0S5, P68431	-
129	6DZT	EM	2.99	2019-05-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of nucleosome in complex with a single chain antibody fragment	Zhou, B.R., Yadav, K.N.S., Borgnia, M., Hong, J., Cao, B., Olins, A.L., Olins, D.E., Bai, Y., Zhang, P.	10.1038/s41467-019-10247-4	31127102	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster		2019	scFv			P02299, P02283, P84051, P84040	0.589
130	6HKT	X-ray	9.70	2018-10-31	octamer, octamer, octamer, octamer, octamer, octamer	6	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	1122	Structure of an H1-bound 6-nucleosome array	Garcia-Saez, I., Menoni, H., Boopathi, R., Shukla, M.S., Soueidan, L., Noirclerc-Savoye, M., Le Roy, A., Skoufias, D.A., Bednar, J., Hamiche, A., Angelov, D., Petosa, C., Dimitrov, S.	10.1016/j.molcel.2018.09.027	30392928	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2018				P62805, P06899, P04908, P68431	-
131	6HTS	EM	4.80	2018-11-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	150	Cryo-EM structure of the human INO80 complex bound to nucleosome	Ayala, R., Willhoft, O., Aramayo, R.J., Wilkinson, M., McCormack, E.A., Ocloo, L., Wigley, D.B., Zhang, X.	10.1038/s41586-018-0021-6	29643506	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2018	RuvB-like 1, RuvB-like 2, Chromatin-remodeling ATPase INO80, Actin-related protein 5, INO80 complex subunit B	INO80, DNA repair, DNA replication, Transcription-associated, Chromatin remodelers	Q9Y265, Q9Y230, Q9ULG1, Q9H9F9, Q9C086	P62805, P06899, P04908, P68431	0.181
132	6I84	EM	4.40	2019-01-02	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	169	Structure of transcribing RNA polymerase II-nucleosome complex	Farnung, L., Vos, S.M., Cramer, P.	10.1038/s41467-018-07870-y	30575770	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4	Transcription-associated, RNA polymerases	P04050, P08518, P16370, P20433, P20434, P20435, P34087, P20436, P27999, P22139, P38902, P40422	P02281, P84233, P06897, P62799	0.241
133	6J99	EM	4.10	2019-02-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	144	Cryo-EM structure of human DOT1L in complex with an H2B-monoubiquitinated nucleosome	Yao, T., Jing, W., Hu, Z., Tan, M., Cao, M., Wang, Q., Li, Y., Yuan, G., Lei, M., Huang, J.	10.1038/s41422-019-0146-7	30770869	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Histone-lysine N-methyltransferase, H3 lysine-79 specific, Ubiquitin	Ubiquitin, Histone_ubiquitination_H2BK120_reader, Histone_methylation_H3K79_writer, Histone PTM writers	Q8TEK3, P62979	P02281, A0A310TTQ1, P62799, Q6AZJ8	0.132
134	6JOU	X-ray	2.17	2020-03-25	octamer	1	canonical_H3	canonical_H4	H2A.Z	canonical_H2B		alphasat_146	146	Crystal structure of the human nucleosome containing H2A.Z.1 S42R	Horikoshi, N., Kujirai, T., Sato, K., Kimura, H., Kurumizaka, H.	10.1016/j.bbrc.2019.06.012	31186139	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, P06899, P0C0S5, P68431	-
135	6JR0	X-ray	2.50	2019-10-02	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal structure of the human nucleosome phased with 12 selenium atoms	Saotome, M., Horikoshi, N., Urano, K., Kujirai, T., Yuzurihara, H., Kurumizaka, H., Kagawa, W.	10.1107/S2059798319012713	31588924	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P62805, P06899, P04908, P68431	-
136	6JR1	X-ray	2.40	2019-10-02	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal structure of the human nucleosome phased with 16 selenium atoms	Saotome, M., Horikoshi, N., Urano, K., Kujirai, T., Yuzurihara, H., Kurumizaka, H., Kagawa, W.	10.1107/S2059798319012713	31588924	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P62805, P06899, P04908, P68431	-
137	6K1I	X-ray	2.75	2020-01-15	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		601_modified	147	Human nucleosome core particle with gammaH2A.X variant	Sharma, D., De Falco, L., Padavattan, S., Rao, C., Geifman-Shochat, S., Liu, C.F., Davey, C.A.	10.1038/s41467-019-13641-0	31848352	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, P06899, P68431, P16104	-
138	6K1J	X-ray	2.85	2020-01-15	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		alphasat_147	145	Human nucleosome core particle with H2A.X variant	Sharma, D., De Falco, L., Padavattan, S., Rao, C., Geifman-Shochat, S., Liu, C.F., Davey, C.A.	10.1038/s41467-019-13641-0	31848352	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, P06899, P68431, P16104	-
139	6K1K	X-ray	2.20	2020-01-15	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		601L	145	Human nucleosome core particle with H2A.X S139E variant	Sharma, D., De Falco, L., Padavattan, S., Rao, C., Geifman-Shochat, S., Liu, C.F., Davey, C.A.	10.1038/s41467-019-13641-0	31848352	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, P06899, P68431, P16104	-
140	6KVD	X-ray	2.21	2019-12-18	octamer	1	canonical_H3	canonical_H4	H2A.J	canonical_H2B		alphasat_146	146	Crystal structure of human nucleosome containing H2A.J	Tanaka, H., Sato, S., Koyama, M., Kujirai, T., Kurumizaka, H.	10.1093/jb/mvz109	31793981	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P62805, P06899, P68431, Q9BTM1	-
141	6KW3	EM	7.13	2019-11-13	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	The ClassA RSC-Nucleosome Complex	Ye, Y., Wu, H., Chen, K., Clapier, C.R., Verma, N., Zhang, W., Deng, H., Cairns, B.R., Gao, N., Chen, Z.	10.1126/science.aay0033	31672915	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Chromatin structure-remodeling complex protein RSC58, Chromatin structure-remodeling complex protein RSC30, Chromatin structure-remodeling complex protein RSC8, High temperature lethal protein 1, Chromatin structure-remodeling complex subunit RSC7, Chromatin structure-remodeling complex subunit SFH1, Chromatin structure-remodeling complex protein RSC6, Nuclear protein STH1/NPS1, Chromatin structure-remodeling complex protein RSC3, Chromatin structure-remodeling complex subunit RSC2, Chromatin structure-remodeling complex subunit RSC9, Chromatin structure-remodeling complex subunit RSC4, Actin-related protein 7, Actin-like protein ARP9, Regulator of Ty1 transposition protein 102	Transcription-associated, RSC (SWI/SNF), Chromatin remodelers	Q07979, P38781, P43609, Q9URQ5, P32832, Q06168, P25632, P32597, Q06639, Q06488, Q03124, Q02206, Q12406, Q05123, P53330	P02281, P84233, P06897, P62799	0.086
142	6KW5	EM	10.13	2020-09-09	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	The ClassC RSC-Nucleosome Complex	Ye, Y.P., Wu, H., Chen, K.J., Verma, N., Cairns, B., Gao, N., Chen, Z.C.		0	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Chromatin structure-remodeling complex protein RSC58, Chromatin structure-remodeling complex protein RSC30, Chromatin structure-remodeling complex protein RSC8, High temperature lethal protein 1, Chromatin structure-remodeling complex subunit RSC7, Chromatin structure-remodeling complex subunit SFH1, Chromatin structure-remodeling complex protein RSC6, Nuclear protein STH1/NPS1, Chromatin structure-remodeling complex protein RSC3, Chromatin structure-remodeling complex subunit RSC2, Chromatin structure-remodeling complex subunit RSC9, Chromatin structure-remodeling complex subunit RSC4, Actin-related protein 7, Actin-like protein ARP9, Regulator of Ty1 transposition protein 102	Transcription-associated, RSC (SWI/SNF), Chromatin remodelers	Q07979, P38781, P43609, Q9URQ5, P32832, Q06168, P25632, P32597, Q06639, Q06488, Q03124, Q02206, Q12406, Q05123, P53330	P84233, P06897, P62799, A0A1L8G0X3	0.062
143	6L49	EM	18.90	2019-12-04	octamer, octamer, octamer	3	cenH3,canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	485	H3-CA-H3 tri-nucleosome with the 22 base-pair linker DNA	Takizawa, Y., Ho, C.H., Tachiwana, H., Matsunami, H., Kobayashi, W., Suzuki, M., Arimura, Y., Hori, T., Fukagawa, T., Ohi, M.D., Wolf, M., Kurumizaka, H.	10.1016/j.str.2019.10.016	31711756	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P06899, P04908, P49450, P68431, P62805	0.071
144	6L4A	EM	12.30	2019-12-04	octamer, octamer, octamer	3	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	485	H3-H3-H3 tri-nucleosome with the 22 base-pair linker DNA	Takizawa, Y., Ho, C.H., Tachiwana, H., Matsunami, H., Kobayashi, W., Suzuki, M., Arimura, Y., Hori, T., Fukagawa, T., Ohi, M.D., Wolf, M., Kurumizaka, H.	10.1016/j.str.2019.10.016	31711756	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P62805, P06899, P04908, P68431	0.085
145	6LER	X-ray	3.00	2021-03-03	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	169	169 bp nucleosome harboring non-identical cohesive DNA termini.	Adhireksan, Z., Sharma, D., Lee, P.L., Bao, Q., Padavattan, S., Shum, W.K., Davey, G.E., Davey, C.A.	10.1093/nar/gkab070	33590100	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2021				P62805, P06899, P04908, P68431	-
146	6M3V	X-ray	4.60	2020-10-07	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	355	355 bp di-nucleosome harboring cohesive DNA termini	Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.	10.1038/s41467-020-18533-2	32958761	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, P06899, P04908, P68431	-
147	6M44	X-ray	3.81	2020-10-07	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	355	355 bp di-nucleosome harboring cohesive DNA termini (high cryoprotectant)	Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.	10.1038/s41467-020-18533-2	32958761	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, P06899, P04908, P68431	-
148	6M4D	EM	4.40	2020-09-23	octamer	1	canonical_H3	canonical_H4	H2A.Z	canonical_H2B		601	125	Structural mechanism of nucleosome dynamics governed by human histone variants H2A.B and H2A.Z.2.2	Zhou, M., Dai, L., Li, C., Shi, L., Huang, Y., Guo, Z., Wu, F., Zhu, P., Zhou, Z.	10.15252/embj.2020105907	33073403	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, Q16778, P68431, Q71UI9	0.311
149	6M4G	EM	2.80	2020-09-23	octamer	1	canonical_H3	canonical_H4	H2A.B	canonical_H2B		601	93	Structural mechanism of nucleosome dynamics governed by human histone variants H2A.B and H2A.Z.2.2	Zhou, M., Dai, L., Li, C., Shi, L., Huang, Y., Guo, Z., Wu, F., Zhu, P., Zhou, Z.	10.15252/embj.2020105907	33073403	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, P0C5Z0, Q16778, P68431	0.493
150	6M4H	EM	3.90	2020-09-23	octamer	1	canonical_H3	canonical_H4	H2A.B	canonical_H2B		601	103	Structural mechanism of nucleosome dynamics governed by human histone variants H2A.B and H2A.Z.2.2	Zhou, M., Dai, L., Li, C., Shi, L., Huang, Y., Guo, Z., Wu, F., Zhu, P., Zhou, Z.	10.15252/embj.2020105907	33073403	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, P0C5Z0, Q16778, P68431	0.365
151	6NE3	EM	3.90	2019-07-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	156	Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h bound at SHL-2	Armache, J.P., Gamarra, N., Johnson, S.L., Leonard, J.D., Wu, S., Narlikar, G.J., Cheng, Y.	10.7554/eLife.46057	31210637	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	Transcription-associated, Heterochromatin-associated, Chromatin remodelers, ISWI	O60264	P02281, P84233, P06897, P62799	0.42
152	6PWE	EM	3.95	2019-08-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of nucleosome core particle	Chittori, S., Hong, J., Bai, Y., Subramaniam, S.	10.1093/nar/gkz670	31402386	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster		2019				P02299, P02283, P84051, P84040	0.409
153	6PWF	EM	4.07	2019-08-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of the ATPase domain of chromatin remodeling factor ISWI bound to the nucleosome	Chittori, S., Hong, J., Bai, Y., Subramaniam, S.	10.1093/nar/gkz670	31402386	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster		2019	chromatin remodeling factor ISWI	Chromatin remodelers, ISWI	G0S9L5	P02299, P02283, P84051, P84040	0.39
154	6PWW	EM	4.40	2019-12-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of MLL1 in complex with RbBP5 and WDR5 bound to the nucleosome	Park, S.H., Ayoub, A., Lee, Y.T., Xu, J., Kim, H., Zheng, W., Zhang, B., Sha, L., An, S., Zhang, Y., Cianfrocco, M.A., Su, M., Dou, Y., Cho, U.S.	10.1038/s41467-019-13550-2	31804488	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Retinoblastoma-binding protein 5, WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A	Transcription-associated, Histone_methylation_H3K4_writer, COMPASS, Histone PTM writers	Q15291, P61964, Q03164	P02281, P84233, P06897, P62799	0.26
155	6PWX	EM	4.20	2019-12-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of RbBP5 bound to the nucleosome	Park, S.H., Ayoub, A., Lee, Y.T., Xu, J., Kim, H., Zheng, W., Zhang, B., Sha, L., An, S., Zhang, Y., Cianfrocco, M.A., Su, M., Dou, Y., Cho, U.S.	10.1038/s41467-019-13550-2	31804488	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Retinoblastoma-binding protein 5	Transcription-associated, Histone_methylation_H3K4_writer, COMPASS, Histone PTM writers	Q15291	P02281, P84233, P06897, P62799	0.332
156	6R8Y	EM	4.30	2019-06-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Cryo-EM structure of NCP-6-4PP(-1)-UV-DDB	Matsumoto, S., Cavadini, S., Bunker, R.D., Grand, R.S., Potenza, A., Rabl, J., Yamamoto, J., Schenk, A.D., Schubeler, D., Iwai, S., Sugasawa, K., Kurumizaka, H., Thoma, N.H.	10.1038/s41586-019-1259-3	31142837	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	DNA damage-binding protein 1, DNA damage-binding protein 2	DNA repair, DCX complex, UV-DDB complex	Q16531, Q92466	P62805, P06899, P04908, P68431	0.313
157	6R8Z	EM	3.90	2019-06-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Cryo-EM structure of NCP_THF2(-1)-UV-DDB	Matsumoto, S., Cavadini, S., Bunker, R.D., Grand, R.S., Potenza, A., Rabl, J., Yamamoto, J., Schenk, A.D., Schubeler, D., Iwai, S., Sugasawa, K., Kurumizaka, H., Thoma, N.H.	10.1038/s41586-019-1259-3	31142837	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	DNA damage-binding protein 1, DNA damage-binding protein 2	DNA repair, DCX complex, UV-DDB complex	Q16531, Q92466	P62805, P06899, P04908, P68431	0.307
158	6R90	EM	4.50	2019-06-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Cryo-EM structure of NCP-THF2(+1)-UV-DDB class A	Matsumoto, S., Cavadini, S., Bunker, R.D., Grand, R.S., Potenza, A., Rabl, J., Yamamoto, J., Schenk, A.D., Schubeler, D., Iwai, S., Sugasawa, K., Kurumizaka, H., Thoma, N.H.	10.1038/s41586-019-1259-3	31142837	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	DNA damage-binding protein 1, DNA damage-binding protein 2	DNA repair, DCX complex, UV-DDB complex	Q16531, Q92466	P62805, P06899, P04908, P68431	0.278
159	6R91	EM	4.10	2019-06-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Cryo-EM structure of NCP_THF2(-3)-UV-DDB	Matsumoto, S., Cavadini, S., Bunker, R.D., Grand, R.S., Potenza, A., Rabl, J., Yamamoto, J., Schenk, A.D., Schubeler, D., Iwai, S., Sugasawa, K., Kurumizaka, H., Thoma, N.H.	10.1038/s41586-019-1259-3	31142837	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	DNA damage-binding protein 1, DNA damage-binding protein 2	DNA repair, DCX complex, UV-DDB complex	Q16531, Q92466	P62805, P06899, P04908, P68431	0.212
160	6R92	EM	4.80	2019-06-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Cryo-EM structure of NCP-THF2(+1)-UV-DDB class B	Matsumoto, S., Cavadini, S., Bunker, R.D., Grand, R.S., Potenza, A., Rabl, J., Yamamoto, J., Schenk, A.D., Schubeler, D., Iwai, S., Sugasawa, K., Kurumizaka, H., Thoma, N.H.	10.1038/s41586-019-1259-3	31142837	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	DNA damage-binding protein 1,DNA damage-binding protein 1, DNA damage-binding protein 2	DNA repair, DCX complex, UV-DDB complex	Q16531, Q92466	P62805, P06899, P04908, P68431	0.22
161	6R93	EM	4.00	2019-06-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Cryo-EM structure of NCP-6-4PP	Matsumoto, S., Cavadini, S., Bunker, R.D., Grand, R.S., Potenza, A., Rabl, J., Yamamoto, J., Schenk, A.D., Schubeler, D., Iwai, S., Sugasawa, K., Kurumizaka, H., Thoma, N.H.	10.1038/s41586-019-1259-3	31142837	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P62805, P06899, P04908, P68431	0.352
162	6R94	EM	3.50	2019-06-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Cryo-EM structure of NCP_THF2(-3)	Matsumoto, S., Cavadini, S., Bunker, R.D., Grand, R.S., Potenza, A., Rabl, J., Yamamoto, J., Schenk, A.D., Schubeler, D., Iwai, S., Sugasawa, K., Kurumizaka, H., Thoma, N.H.	10.1038/s41586-019-1259-3	31142837	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P62805, P06899, P04908, P68431	0.363
163	6RYR	EM	3.10	2020-07-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	149	Nucleosome-CHD4 complex structure (single CHD4 copy)	Farnung, L., Ochmann, M., Cramer, P.	10.7554/eLife.56178	32543371	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Chromodomain-helicase-DNA-binding protein 4,Chromodomain-helicase-DNA-binding protein 4,Chromodomain-helicase-DNA-binding protein 4	NuRD (CHD), Chromatin remodelers	Q14839	P02281, P84233, P06897, P62799	0.52
164	6RYU	EM	4.00	2020-07-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	149	Nucleosome-CHD4 complex structure (two CHD4 copies)	Farnung, L., Ochmann, M., Cramer, P.	10.7554/eLife.56178	32543371	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Chromodomain-helicase-DNA-binding protein 4,CHD4,Chromodomain-helicase-DNA-binding protein 4	NuRD (CHD), Chromatin remodelers	Q14839	P02281, P84233, P06897, P62799	0.342
165	6T90	EM	3.05	2020-05-06	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	141	OCT4-SOX2-bound nucleosome - SHL-6	Michael, A.K., Grand, R.S., Isbel, L., Cavadini, S., Kozicka, Z., Kempf, G., Bunker, R.D., Schenk, A.D., Graff-Meyer, A., Pathare, G.R., Weiss, J., Matsumoto, S., Burger, L., Schubeler, D., Thoma, N.H.	10.1126/science.abb0074	32327602	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Green fluorescent protein,POU domain, class 5, transcription factor 1, Transcription factor SOX-2	Transcription-associated, Transcription factors	P42212, P48431	P62805, P06899, P04908, P68431	0.451
166	6T93	EM	3.49	2020-05-06	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	151	Nucleosome with OCT4-SOX2 motif at SHL-6	Michael, A.K., Grand, R.S., Isbel, L., Cavadini, S., Kozicka, Z., Kempf, G., Bunker, R.D., Schenk, A.D., Graff-Meyer, A., Pathare, G.R., Weiss, J., Matsumoto, S., Burger, L., Schubeler, D., Thoma, N.H.	10.1126/science.abb0074	32327602	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, P06899, P04908, P68431	0.419
167	6UPK	EM	4.90	2019-12-11	hexamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	72	Structure of FACT_subnucleosome complex 1	Liu, Y., Zhou, K., Zhang, N., Wei, H., Tan, Y.Z., Zhang, Z., Carragher, B., Potter, C.S., D'Arcy, S., Luger, K.	10.1038/s41586-019-1820-0	31775157	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	FACT complex subunit SPT16, FACT complex subunit SSRP1	Histone chaperones, FACT, DNA repair, DNA replication, Transcription-associated	Q9Y5B9, Q08945	P62805, P62807, P68431, Q93077	0.203
168	6UPL	EM	7.40	2019-12-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	79	Structure of FACT_subnucleosome complex 2	Liu, Y., Zhou, K., Zhang, N., Wei, H., Tan, Y.Z., Zhang, Z., Carragher, B., Potter, C.S., D'Arcy, S., Luger, K.	10.1038/s41586-019-1820-0	31775157	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	FACT complex subunit SPT16, FACT complex subunit SSRP1	Histone chaperones, FACT, DNA repair, DNA replication, Transcription-associated	Q9Y5B9, Q08945	P62805, P62807, P68431, Q93077	0.173
169	6USJ	EM	10.50	2020-10-14	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	160	Structure of two nucleosomes bridged by human PARP2	Gaullier, G., Roberts, G., Muthurajan, U.M., Bowerman, S., Rudolph, J., Mahadevan, J., Jha, A., Rae, P.S., Luger, K.	10.1371/journal.pone.0240932	33141820	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Poly [ADP-ribose] polymerase 2	DNA repair, Histone PTM writers, Histone_PARylation_writer	Q9UGN5	P62805, P06899, P04908, P68431	0.092
170	6V2K	X-ray	2.60	2020-11-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The nucleosome structure after H2A-H2B exchange	Hirano, R., Arimura, Y., Kujirai, T., Shibata, M., Okuda, A., Morishima, K., Inoue, R., Sugiyama, M., Kurumizaka, H.	10.1038/s42003-021-01707-z	33580188	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, P06899, P04908, P68431	-
171	6V92	EM	20.00	2020-01-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	RSC-NCP	Patel, A.B., Moore, C.M., Greber, B.J., Luo, J., Zukin, S.A., Ranish, J., Nogales, E.	10.7554/eLife.54449	31886770	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Actin-related protein 7, Actin-like protein ARP9, High temperature lethal protein 1, Chromatin structure-remodeling complex protein RSC14, Chromatin structure-remodeling complex subunit RSC7, Chromatin structure-remodeling complex subunit RSC2, Chromatin structure-remodeling complex protein RSC3, Chromatin structure-remodeling complex subunit RSC4, Chromatin structure-remodeling complex protein RSC8, Chromatin structure-remodeling complex protein RSC6, Chromatin structure-remodeling complex subunit RSC9, Chromatin structure-remodeling complex protein RSC58, Regulator of Ty1 transposition protein 102, Chromatin structure-remodeling complex subunit SFH1, Nuclear protein STH1/NPS1, Chromatin structure-remodeling complex protein RSC30	Transcription-associated, RSC (SWI/SNF), Chromatin remodelers	Q12406, Q05123, Q9URQ5, P38210, P32832, Q06488, Q06639, Q02206, P43609, P25632, Q03124, Q07979, P53330, Q06168, P32597, P38781	P62805, O60814, P04908, P68431	0.053
172	6W5I	EM	6.90	2021-03-31	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class01)	Lee, Y.T., Ayoub, A., Park, S.H., Sha, L., Xu, J., Mao, F., Zheng, W., Zhang, Y., Cho, U.S., Dou, Y.	10.1038/s41467-021-23268-9	34012049	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	Retinoblastoma-binding protein 5, WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A, Set1/Ash2 histone methyltransferase complex subunit ASH2	Transcription-associated, Histone_methylation_H3K4_writer, COMPASS, Histone PTM writers	Q15291, P61964, Q03164, Q9UBL3	P02281, P84233, P06897, P62799	0.135
173	6W5M	EM	4.60	2021-03-31	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class02)	Lee, Y.T., Ayoub, A., Park, S.H., Sha, L., Xu, J., Mao, F., Zheng, W., Zhang, Y., Cho, U.S., Dou, Y.	10.1038/s41467-021-23268-9	34012049	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	Retinoblastoma-binding protein 5, WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A, Set1/Ash2 histone methyltransferase complex subunit ASH2	Transcription-associated, Histone_methylation_H3K4_writer, COMPASS, Histone PTM writers	Q15291, P61964, Q03164, Q9UBL3	P02281, P84233, P06897, P62799	0.177
174	6W5N	EM	6.00	2021-03-31	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of MLL1 in complex with RbBP5, WDR5, SET1, and ASH2L bound to the nucleosome (Class05)	Lee, Y.T., Ayoub, A., Park, S.H., Sha, L., Xu, J., Mao, F., Zheng, W., Zhang, Y., Cho, U.S., Dou, Y.	10.1038/s41467-021-23268-9	34012049	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	Retinoblastoma-binding protein 5, WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A, Set1/Ash2 histone methyltransferase complex subunit ASH2	Transcription-associated, Histone_methylation_H3K4_writer, COMPASS, Histone PTM writers	Q15291, P61964, Q03164, Q9UBL3	P02281, P84233, P06897, P62799	0.167
175	6YOV	EM	3.42	2020-05-06	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	131	OCT4-SOX2-bound nucleosome - SHL+6	Michael, A.K., Grand, R.S., Isbel, L., Cavadini, S., Kozicka, Z., Kempf, G., Bunker, R.D., Schenk, A.D., Graff-Meyer, A., Pathare, G.R., Weiss, J., Matsumoto, S., Burger, L., Schubeler, D., Thoma, N.H.	10.1126/science.abb0074	32327602	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Green fluorescent protein,POU domain, class 5, transcription factor 1, Transcription factor SOX-2	Transcription-associated, Transcription factors	P42212, P48431	P62805, P06899, P04908, P68431	0.35
176	7C0M	EM	3.90	2020-09-16	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Human cGAS-nucleosome complex	Kujirai, T., Zierhut, C., Takizawa, Y., Kim, R., Negishi, L., Uruma, N., Hirai, S., Funabiki, H., Kurumizaka, H.	10.1126/science.abd0237	32912999	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Cyclic GMP-AMP synthase	DNA repair, Antiviral defense, 2'3'-cGAMP, Synthesis of second messengers	Q8N884	P62805, P06899, P04908, P68431	0.225
177	7D1Z	EM	3.15	2021-02-10	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Cryo-EM structure of SET8-nucleosome complex	Ho, C.H., Takizawa, Y., Kobayashi, W., Arimura, Y., Kimura, H., Kurumizaka, H.	10.26508/lsa.202000919	33574035	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2021	Isoform 2 of N-lysine methyltransferase KMT5A	Histone_methylation_H4K20_writer, Heterochromatin-associated, Transcription-associated, Nuclear division, Histone PTM writers	Q9NQR1	P62805, P06899, P04908, P68431	0.514
178	7JO9	EM	3.30	2020-09-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	1:1 cGAS-nucleosome complex	Boyer, J.A., Spangler, C.J., Strauss, J.D., Cesmat, A.P., Liu, P., McGinty, R.K., Zhang, Q.	10.1126/science.abd0609	32913000	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Cyclic GMP-AMP synthase	DNA repair, Antiviral defense, 2'3'-cGAMP, Synthesis of second messengers	Q8C6L5	P62805, P0C0S8, P62807, Q71DI3	0.483
179	7JOA	EM	3.30	2020-09-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	2:1 cGAS-nucleosome complex	Boyer, J.A., Spangler, C.J., Strauss, J.D., Cesmat, A.P., Liu, P., McGinty, R.K., Zhang, Q.	10.1126/science.abd0609	32913000	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Cyclic GMP-AMP synthase	DNA repair, Antiviral defense, 2'3'-cGAMP, Synthesis of second messengers	Q8C6L5	P62805, P0C0S8, P62807, Q71DI3	0.474
180	7K61	EM	2.85	2020-11-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	197	Cryo-EM structure of 197bp nucleosome aided by scFv	Zhou, B.R., Feng, H., Kale, S., Fox, T., Khant, H., de Val, N., Ghirlando, R., Panchenko, A.R., Bai, Y.	10.1016/j.molcel.2020.10.038	33238161	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	scFv20			P62805, P06899, P04908, P68431	0.529
181	7KBD	EM	3.38	2021-09-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	151	Nucleosome in interphase chromosome formed in Xenopus egg extract (oligo fraction)	Arimura, Y., Shih, R.M., Froom, R., Funabiki, H.	10.1016/j.molcel.2021.08.010	34478647	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021				P02281, Q6DKE3, P84233, P62799	0.489
182	7KBE	EM	3.50	2021-09-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	156	Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (oligo fraction)	Arimura, Y., Shih, R.M., Froom, R., Funabiki, H.	10.1016/j.molcel.2021.08.010	34478647	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021				P02281, Q6DKE3, P84233, P62799	0.445
183	7LYA	EM	2.91	2021-07-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle with linked histone proteins H2A and H2B	Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, E., Mer, G.	10.1038/s41586-021-03716-8	34321665	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2021				P62805, P06899, P04908, P68431	0.59
184	7LYB	EM	3.28	2021-07-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with BRCA1-BARD1-UbcH5c	Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, E., Mer, G.	10.1038/s41586-021-03716-8	34321665	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2021	Isoform 7 of Breast cancer type 1 susceptibility protein, BRCA1-associated RING domain protein 1, Ubiquitin-conjugating enzyme E2 D3	E3 ubiquitin-protein ligation, Histone_ubiquitination_H2AK125_writer, DNA repair, Histone_ubiquitination_H2AK127_writer, Histone_ubiquitination_H2AK129_writer, Transcription-associated, Histone PTM writers	P38398, Q99728, P61077	P62805, P06899, P04908, P68431	0.458
185	7LYC	EM	2.94	2021-06-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A Lys13 and Lys15 in complex with BARD1 (residues 415-777)	Hu, Q., Botuyan, M.V., Zhao, D., Cui, G., Mer, E., Mer, G.	10.1038/s41586-021-03716-8	34321665	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2021	Ubiquitin, BRCA1-associated RING domain protein 1	E3 ubiquitin-protein ligation, Ubiquitin, DNA repair, Histone_ubiquitination_H2AK125_writer, Histone_ubiquitination_H2AK127_writer, Histone_ubiquitination_H2AK129_writer, Transcription-associated, Histone PTM writers	P0CG47, Q99728	P62805, P06899, P04908, P68431	0.566
186	7NKX	EM	2.90	2021-08-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	139	RNA polymerase II-Spt4/5-nucleosome-Chd1 structure	Farnung, L., Ochmann, M., Engeholm, M., Cramer, P.	10.1038/s41594-021-00578-6	33846633	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, Chromo domain-containing protein 1, Chromatin elongation factor SPT4, Transcription elongation factor SPT5	Heterochromatin-associated, CHD, RNA polymerases, Transcription factors, Transcription-associated, Centromere-associated, Chromatin remodelers, SPT4-SPT5 complex	P04050, P08518, P16370, P20433, P20434, P20435, P34087, P20436, P27999, P22139, P38902, P40422, P32657, P32914, P27692	P02281, P84233, P06897, P62799	0.444
187	7NKY	EM	3.20	2021-07-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	148	RNA Polymerase II-Spt4/5-nucleosome-FACT structure	Farnung, L., Ochmann, M., Engeholm, M., Cramer, P.	10.1038/s41594-021-00578-6	33846633	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, FACT complex subunit POB3, FACT complex subunit SPT16, Chromatin elongation factor SPT4, Transcription elongation factor SPT5	Heterochromatin-associated, Histone chaperones, RNA polymerases, FACT, DNA repair, Transcription factors, DNA replication, Transcription-associated, Centromere-associated, SPT4-SPT5 complex	P04050, P08518, P16370, P20433, P20434, P20435, P34087, P20436, P27999, P22139, P38902, P40422, Q04636, P32558, P32914, P27692	P02281, P84233, P06897, P62799	0.358
188	7NL0	EM	3.50	2021-08-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			131	Cryo-EM structure of the Lin28B nucleosome core particle	Roberts, G.A., Ozkan, B., Gachulincova, I., O'Dwyer, M.R., Hall-Ponsele, E., Saxena, M., Robinson, P.J., Soufi, A.	10.1038/s41556-021-00727-5	34354236	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2021				P62805, P06899, P04908, P68431	0.519
189	7SCY	EM	4.10	2022-01-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Nuc147 bound to single BRCT	Rudolph, J., Muthurajan, U.M., Palacio, M., Mahadevan, J., Roberts, G., Erbse, A.H., Dyer, P.N., Luger, K.	10.1016/j.molcel.2021.11.014	34919819	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Poly [ADP-ribose] polymerase 1	DNA repair, Histone PTM writers, Histone_PARylation_writer	P09874	P62805, P06899, P04908, P68431	0.273
190	7SCZ	EM	3.50	2022-01-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Nuc147 bound to multiple BRCTs	Rudolph, J., Muthurajan, U.M., Palacio, M., Mahadevan, J., Roberts, G., Erbse, A.H., Dyer, P.N., Luger, K.	10.1016/j.molcel.2021.11.014	34919819	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Poly [ADP-ribose] polymerase 1	DNA repair, Histone PTM writers, Histone_PARylation_writer	P09874	P62805, P06899, P04908, P68431	0.425
191	7U0G	EM	2.60	2023-06-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			133	structure of LIN28b nucleosome bound 3 OCT4	Guan, R., Lian, T., Zhou, B.R., Wheeler, D., Bai, Y.	10.1016/j.molcel.2023.05.030	37327775	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Maltodextrin-binding protein,POU domain, class 5, transcription factor 1, Single-chain variable fragment		P0AEX9	P62805, Q16778, Q16777, P68431	0.531
192	7U0I	EM	2.60	2023-06-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			149	Structure of LIN28b nucleosome bound 2 OCT4	Guan, R., Lian, T., Zhou, B.R., Wheeler, D., Bai, Y.	10.1016/j.molcel.2023.05.030	37327775	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Single-chain variable fragment, Maltodextrin-binding protein,POU domain, class 5, transcription factor 1		P0AEX9	P62805, Q16778, Q16777, P68431	0.548
193	7U0J	EM	2.70	2023-06-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			149	Structure of 162bp LIN28b nucleosome	Guan, R., Lian, T., Zhou, B.R., Wheeler, D., Bai, Y.	10.1016/j.molcel.2023.05.030	37327775	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Single-chain variable fragment			P62805, Q16778, Q16777, P68431	0.568
194	7UNC	EM	3.00	2022-10-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	155	Pol II-DSIF-SPT6-PAF1c-TFIIS complex with rewrapped nucleosome	Filipovski, M., Soffers, J.H.M., Vos, S.M., Farnung, L.	10.1126/science.abo3851	35709268	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase II subunit RPB3, RPOL4c domain-containing protein, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, RPB8, RPB9, RPB10, RPB11, RNA polymerase II subunit K, Transcription elongation factor SPT6, Transcription elongation factor A protein 1, RNA polymerase-associated protein CTR9 homolog, RNA polymerase-associated protein RTF1 homolog, RNA polymerase-associated protein LEO1, RNA polymerase II-associated factor 1 homolog, WDR61, Parafibromin, Transcription elongation factor SPT5	Histone chaperones, RNA polymerases, Histone_methylation_H3K4_writer, Histone_ubiquitination_H2BK120_writer, Transcription factors, Transcription-associated, Histone PTM writers, PAF1C	A0A7M4DUC2, A0A4X1TVZ5, A0A481DF93, A0A8D1GCS3, A0A4X1VTX4, A0A4X1VEK9, A0A4X1VKG7, A0A4X1TRS6, Q7KZ85, P23193, Q6PD62, Q92541, Q8WVC0, Q8N7H5, Q9GZS3, Q6P1J9, O00267	P02281, P84233, P62799, Q6AZJ8	0.344
195	7UND	EM	3.00	2022-10-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	131	Pol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38)	Filipovski, M., Soffers, J.H.M., Vos, S.M., Farnung, L.	10.1126/science.abo3851	35709268	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase II subunit RPB3, RPOL4c domain-containing protein, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, RPB8, RPB9, RPB10, RPB11, RNA polymerase II subunit K, Transcription elongation factor SPT6, Transcription elongation factor A protein 1, RNA polymerase-associated protein CTR9 homolog, RNA polymerase-associated protein RTF1 homolog, RNA polymerase-associated protein LEO1, RNA polymerase II-associated factor 1 homolog, WDR61, Parafibromin, Transcription elongation factor SPT4, Transcription elongation factor SPT5	Histone chaperones, RNA polymerases, Histone_methylation_H3K4_writer, Histone_ubiquitination_H2BK120_writer, Transcription factors, Transcription-associated, Histone PTM writers, PAF1C	A0A7M4DUC2, A0A4X1TVZ5, A0A481DF93, A0A8D1GCS3, A0A4X1VTX4, A0A4X1VEK9, A0A4X1VKG7, A0A4X1TRS6, Q7KZ85, P23193, Q6PD62, Q92541, Q8WVC0, Q8N7H5, Q9GZS3, Q6P1J9, P63272, O00267	P02281, P84233, P62799, Q6AZJ8	0.216
196	7V90	EM	3.50	2022-07-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		telomeric_human	145	Telomeric mononucleosome	Soman, A., Wong, S.Y., Korolev, N., Surya, W., Lattmann, S., Vogirala, V.K., Chen, Q., Berezhnoy, N.V., van Noort, J., Rhodes, D., Nordenskiold, L.	10.1038/s41586-022-05236-5	36104563	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, O60814, P04908, P68431	0.459
197	7V96	EM	3.92	2022-07-27	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		telomeric_human	275	Telomeric Dinucleosome	Soman, A., Wong, S.Y., Korolev, N., Surya, W., Lattmann, S., Vogirala, V.K., Chen, Q., Berezhnoy, N.V., van Noort, J., Rhodes, D., Nordenskiold, L.	10.1038/s41586-022-05236-5	36104563	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, O60814, P04908, P68431	0.4
198	7V9C	EM	4.50	2022-07-27	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		telomeric_human	273	Telomeric Dinucleosome in open state	Soman, A., Wong, S.Y., Korolev, N., Surya, W., Lattmann, S., Vogirala, V.K., Chen, Q., Berezhnoy, N.V., van Noort, J., Rhodes, D., Nordenskiold, L.	10.1038/s41586-022-05236-5	36104563	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, O60814, P04908, P68431	0.109
199	7V9J	EM	8.00	2022-07-27	octamer, octamer, octamer	3	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		telomeric_human	399	Telomeric trinucleosome	Soman, A., Wong, S.Y., Korolev, N., Surya, W., Lattmann, S., Vogirala, V.K., Chen, Q., Berezhnoy, N.V., van Noort, J., Rhodes, D., Nordenskiold, L.	10.1038/s41586-022-05236-5	36104563	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, O60814, P04908, P68431	0.107
200	7V9K	EM	8.10	2022-07-27	octamer, octamer, octamer, octamer	4	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		telomeric_human	539	Telomeric tetranucleosome	Soman, A., Wong, S.Y., Korolev, N., Surya, W., Lattmann, S., Vogirala, V.K., Chen, Q., Berezhnoy, N.V., van Noort, J., Rhodes, D., Nordenskiold, L.	10.1038/s41586-022-05236-5	36104563	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, O60814, P04908, P68431	0.076
201	7V9S	EM	11.00	2022-07-27	octamer, octamer, octamer	3	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		telomeric_human	388	Telomeric trinucleosome in open state	Soman, A., Wong, S.Y., Korolev, N., Surya, W., Lattmann, S., Vogirala, V.K., Chen, Q., Berezhnoy, N.V., van Noort, J., Rhodes, D., Nordenskiold, L.	10.1038/s41586-022-05236-5	36104563	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, O60814, P04908, P68431	0.093
202	7VA4	EM	14.00	2022-07-27	octamer, octamer, octamer, octamer	4	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		telomeric_human	539	Telomeric tetranucleosome in open state	Soman, A., Wong, S.Y., Korolev, N., Surya, W., Lattmann, S., Vogirala, V.K., Chen, Q., Berezhnoy, N.V., van Noort, J., Rhodes, D., Nordenskiold, L.	10.1038/s41586-022-05236-5	36104563	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, O60814, P04908, P68431	0.043
203	7VDT	EM	2.80	2022-05-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	135	The motor-nucleosome module of human chromatin remodeling PBAF-nucleosome complex	Yuan, J.J., Chen, K.J., Zhang, W.B., Chen, Z.C.	10.1038/s41586-022-04658-5	35477757	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	Isoform 2 of Transcription activator BRG1	Transcription-associated, Chromatin remodelers, SWI/SNF	P51532	P02281, P84233, P06897, P62799	0.549
204	7VDV	EM	3.40	2022-05-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	135	The overall structure of human chromatin remodeling PBAF-nucleosome complex	Yuan, J.J., Chen, K.J., Zhang, W.B., Chen, Z.C.	10.1038/s41586-022-04658-5	35477757	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	Isoform 2 of Transcription activator BRG1, Actin-like protein 6A, Actin, cytoplasmic 1, AT-rich interactive domain-containing protein 2,AT-rich interactive domain-containing protein 2, PHD finger protein 10, Isoform 2 of Bromodomain-containing protein 7, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, SWI/SNF complex subunit SMARCC2, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, Protein polybromo-1	Transcription-associated, PBAF (SWI/SNF), Chromatin remodelers, SWI/SNF	P51532, O96019, P60709, Q68CP9, Q8WUB8, Q9NPI1, Q12824, Q8TAQ2, Q96GM5, Q969G3, Q86U86	P02281, P84233, P06897, P62799	0.315
205	7VVU	EM	3.40	2022-08-10	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	180	NuA4 HAT module bound to the nucleosome	Qu, K., Chen, K., Wang, H., Li, X., Chen, Z.	10.1038/s41586-022-05303-x	36198799	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	Histone acetyltransferase ESA1, Enhancer of polycomb-like protein 1, Chromatin modification-related protein YNG2, Chromatin modification-related protein EAF6	Heterochromatin-associated, Histone_acetylation_writer, Transcription-associated, Histone PTM writers, NuA4	Q08649, P43572, P38806, P47128	P02281, P84233, P06897, P62799	0.314
206	7VVZ	EM	8.80	2022-08-10	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	180	NuA4 bound to the nucleosome	Qu, K., Chen, K., Wang, H., Li, X., Chen, Z.	10.1038/s41586-022-05303-x	36198799	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	Chromatin modification-related protein EAF1, Actin-related protein 4, Actin, Enhancer of polycomb-like protein 1, SWR1-complex protein 4, Transcription-associated protein 1, Histone acetyltransferase ESA1, Chromatin modification-related protein YNG2, Epl1 arginine anchor, Chromatin modification-related protein EAF6	Heterochromatin-associated, Histone_acetylation_writer, Transcription-associated, Histone PTM writers, NuA4	Q06337, P80428, P60010, P43572, P53201, P38811, Q08649, P38806, P47128	P02281, P84233, P06897, P62799	0.108
207	7VZ4	EM	1.89	2023-05-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601L	145	Cryo-EM structure of human nucleosome core particle composed of the Widom 601L DNA sequence	Takizawa, Y., Ho, C.H., Sato, S., Danev, R., Kurumizaka, H.		0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023				P62805, P06899, P04908, P68431	0.724
208	7X3T	EM	5.40	2023-09-20	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	339	Cryo-EM structure of ISW1a-dinucleosome	Li, L., Chen, K., Sia, Y., Hu, P., Ye, Y., Chen, Z.	10.1038/s41594-023-01174-6	38177688	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	ISWI one complex protein 3, ISWI chromatin-remodeling complex ATPase ISW1	Transcription-associated, Chromatin remodelers, ISWI	P43596, P38144	P02281, P84233, P06897, P62799	0.192
209	7X3V	EM	3.09	2023-09-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of IOC3-N2 nucleosome	Li, L., Chen, K., Sia, Y., Hu, P., Ye, Y., Chen, Z.	10.1038/s41594-023-01174-6	38177688	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	ISWI one complex protein 3	Chromatin remodelers, ISWI	P43596	P02281, P84233, P06897, P62799	0.502
210	7X3W	EM	3.10	2023-09-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of ISW1-N1 nucleosome	Li, L., Chen, K., Sia, Y., Hu, P., Ye, Y., Chen, Z.	10.1038/s41594-023-01174-6	38177688	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	ISWI chromatin-remodeling complex ATPase ISW1	Transcription-associated, Chromatin remodelers, ISWI	P38144	P02281, P84233, P06897, P62799	0.489
211	7X3X	EM	3.20	2023-09-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of N1 nucleosome-RA	Li, L., Chen, K., Sia, Y., Hu, P., Ye, Y., Chen, Z.	10.1038/s41594-023-01174-6	38177688	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	ISWI chromatin-remodeling complex ATPase ISW1	Transcription-associated, Chromatin remodelers, ISWI	P38144	P02281, P84233, P06897, P62799	0.44
212	7X57	EM	3.63	2022-11-16	H3_H4_tetramer, H3_H4_tetramer	2	canonical_H3	canonical_H4				601	121	Cryo-EM structure of human subnucleosome (closed form)	Nozawa, K., Takizawa, Y., Pierrakeas, L., Sogawa-Fujiwara, C., Saikusa, K., Akashi, S., Luk, E., Kurumizaka, H.	10.1073/pnas.2206542119	36322721	Homo sapiens	Homo sapiens				2022				P62805, P68431	0.37
213	7X58	EM	3.93	2022-11-16	H3_H4_tetramer, H3_H4_tetramer	2	canonical_H3	canonical_H4				601	121	Cryo-EM structure of human subnucleosome (open form)	Nozawa, K., Takizawa, Y., Pierrakeas, L., Sogawa-Fujiwara, C., Saikusa, K., Akashi, S., Luk, E., Kurumizaka, H.	10.1073/pnas.2206542119	36322721	Homo sapiens	Homo sapiens				2022				P62805, P68431	0.35
214	7XFC	EM	2.90	2023-04-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	143	Structure of nucleosome-DI complex (-30I, Apo state)	Zheng, L., Tsai, B., Gao, N.	10.1038/s41421-023-00560-0	37339965	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023				P02281, P84233, P06897, P62799	0.569
215	7XFH	EM	2.90	2023-04-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	132	Structure of nucleosome-AAG complex (A-30I, post-catalytic state)	Zheng, L., Tsai, B., Gao, N.	10.1038/s41421-023-00560-0	37339965	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	DNA-3-methyladenine glycosylase	DNA repair	P29372	P02281, P84233, P06897, P62799	0.515
216	7XFI	EM	2.90	2023-04-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	136	Structure of nucleosome-DI complex (-50I, Apo state)	Zheng, L., Tsai, B., Gao, N.	10.1038/s41421-023-00560-0	37339965	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023				P02281, P84233, P06897, P62799	0.525
217	7XFJ	EM	3.00	2023-11-08	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	131	Structure of nucleosome-AAG complex (T-50I, post-catalytic state)	Zheng, L., Tsai, B., Gao, N.	10.1038/s41421-023-00560-0	37339965	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	DNA-3-methyladenine glycosylase	DNA repair	P29372	P02281, P84233, P06897, P62799	0.466
218	7XFL	EM	2.80	2023-04-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	134	Structure of nucleosome-AAG complex (A-53I, free state)	Zheng, L., Tsai, B., Gao, N.	10.1038/s41421-023-00560-0	37339965	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023				P02281, P84233, P06897, P62799	0.55
219	7XFM	EM	3.10	2023-04-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	133	Structure of nucleosome-AAG complex (A-53I, post-catalytic state)	Zheng, L., Tsai, B., Gao, N.	10.1038/s41421-023-00560-0	37339965	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	DNA-3-methyladenine glycosylase	DNA repair	P29372	P02281, P84233, P06897, P62799	0.466
220	7XFN	EM	2.80	2023-04-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	143	Structure of nucleosome-DI complex (-55I, Apo state)	Zheng, L., Tsai, B., Gao, N.	10.1038/s41421-023-00560-0	37339965	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023				P02281, P84233, P06897, P62799	0.55
221	7XNP	EM	2.90	2023-05-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	123	Structure of nucleosome-AAG complex (A-55I, post-catalytic state)	Zheng, L., Tsai, B., Gao, N.	10.1038/s41421-023-00560-0	37339965	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023				P02281, P84233, P06897, P62799	0.563
222	7XZX	EM	4.53	2022-10-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	171	Cryo-EM structure of the nucleosome in complex with p53 DNA-binding domain	Nishimura, M., Takizawa, Y., Nozawa, K., Kurumizaka, H.	10.1093/pnasnexus/pgac177	36714865	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Cellular tumor antigen p53	DNA repair	P04637	P62805, P06899, P04908, P68431	0.146
223	7XZY	EM	3.97	2022-10-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	165	Cryo-EM structure of the nucleosome containing 193 base-pair DNA with a p53 target sequence	Nishimura, M., Takizawa, Y., Nozawa, K., Kurumizaka, H.	10.1093/pnasnexus/pgac177	36714865	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, P06899, P04908, P68431	0.256
224	7XZZ	EM	4.07	2022-10-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	155	Cryo-EM structure of the nucleosome in complex with p53	Nishimura, M., Takizawa, Y., Nozawa, K., Kurumizaka, H.	10.1093/pnasnexus/pgac177	36714865	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Cellular tumor antigen p53	DNA repair	P04637	P62805, P06899, P04908, P68431	0.192
225	7Y00	EM	3.96	2022-10-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	155	Cryo-EM structure of the nucleosome containing 169 base-pair DNA with a p53 target sequence	Nishimura, M., Takizawa, Y., Nozawa, K., Kurumizaka, H.	10.1093/pnasnexus/pgac177	36714865	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, P06899, P04908, P68431	0.32
226	7Y5W	EM	3.50	2023-08-16	H3_H4_tetramer, H3_H4_tetramer	2	canonical_H3	canonical_H4				601	101	Cryo-EM structure of the left-handed Di-tetrasome	Liu, C.P., Yu, Z., Xiong, J., Hu, J., Song, A., Ding, D., Yu, C., Yang, N., Wang, M., Yu, J., Hou, P., Zeng, K., Li, Z., Zhang, Z., Zhang, X., Li, W., Zhang, Z., Zhu, B., Li, G., Xu, R.M.	10.1126/science.add8673	37616371	Homo sapiens	Homo sapiens				2023				P62805, P68431	0.35
227	7Y60	EM	3.80	2023-08-16	H3_H4_tetramer, H3_H4_tetramer	2	canonical_H3	canonical_H4				601	108	Cryo-EM structure of human CAF1LC bound right-handed Di-tetrasome	Liu, C.P., Yu, Z., Xiong, J., Hu, J., Song, A., Ding, D., Yu, C., Yang, N., Wang, M., Yu, J., Hou, P., Zeng, K., Li, Z., Zhang, Z., Zhang, X., Li, W., Zhang, Z., Zhu, B., Li, G., Xu, R.M.	10.1126/science.add8673	37616371	Homo sapiens	Homo sapiens				2023	Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B	Histone chaperones, DNA repair, DNA replication, CAF-1	Q13111, Q13112	P62805, P68431	0.304
228	7Y61	EM	5.60	2023-08-16	H3_H4_tetramer, H3_H4_tetramer	2	canonical_H3	canonical_H4				601	92	Cryo-EM structure of the two CAF1LCs bound right-handed Di-tetrasome	Liu, C.P., Yu, Z., Xiong, J., Hu, J., Song, A., Ding, D., Yu, C., Yang, N., Wang, M., Yu, J., Hou, P., Zeng, K., Li, Z., Zhang, Z., Zhang, X., Li, W., Zhang, Z., Zhu, B., Li, G., Xu, R.M.	10.1126/science.add8673	37616371	Homo sapiens	Homo sapiens				2023	Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B	Histone chaperones, DNA repair, DNA replication, CAF-1	Q13111, Q13112	P62805, P68431	0.189
229	7YOZ	EM	4.30	2022-11-16	H3_H4_tetramer, H3_H4_tetramer	2	canonical_H3	canonical_H4				601	121	Cryo-EM structure of human subnucleosome (intermediate form)	Nozawa, K., Takizawa, Y., Pierrakeas, L., Sogawa-Fujiwara, C., Saikusa, K., Akashi, S., Luk, E., Kurumizaka, H.	10.1073/pnas.2206542119	36322721	Homo sapiens	Homo sapiens				2022				P62805, P68431	0.246
230	7ZI4	EM	3.20	2023-04-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	158	Cryo-EM structure of the human INO80 complex bound to a WT nucleosome	Vance, N.R., Ayala, R., Willhoft, O., Tvardovskiy, A., McCormack, E.A., Bartke, T., Zhang, X., Wigley, D.B.		0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	RuvB-like 1, RuvB-like 2, Chromatin-remodeling ATPase INO80, Actin-related protein 5, INO80 complex subunit C, INO80 complex subunit B	INO80, DNA repair, DNA replication, Transcription-associated, Chromatin remodelers	Q9Y265, Q9Y230, Q9ULG1, Q9H9F9, Q6PI98, Q9C086	P62805, P06899, P04908, P68431	0.462
231	8BVW	EM	4.00	2023-05-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	206	RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)	Abril-Garrido, J., Dienemann, C., Grabbe, F., Velychko, T., Lidschreiber, M., Wang, H., Cramer, P.	10.1016/j.molcel.2023.04.011	37148879	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	General transcription and DNA repair factor IIH helicase subunit XPB, TFIIH basal transcription factor complex helicase XPD subunit, General transcription factor IIH subunit 1, General transcription factor IIH subunit 4, General transcription factor IIH subunit 2, General transcription factor IIH subunit 3, General transcription factor IIH subunit 5, CDK-activating kinase assembly factor MAT1, Cyclin-dependent kinase 7, Cyclin-H, DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase II subunit RPB3, RNA polymerase II subunit D, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11-a, RNA polymerase II subunit K, Transcription initiation factor IIB, TATA-box-binding protein, General transcription factor IIF subunit 1, General transcription factor IIF subunit 2, Transcription initiation factor IIA subunit 1, Transcription initiation factor IIA subunit 2, General transcription factor IIE subunit 1, Transcription initiation factor IIE subunit beta	Transcription-associated, Transcription factors, DNA repair, RNA polymerases	P19447, P18074, P32780, Q92759, Q13888, Q13889, Q6ZYL4, P51948, P50613, P51946, A0A7M4DUC2, I3LGP4, I3LCH3, A0A287ADR4, I3LSI7, A0A4X1VEK9, A0A4X1VKG7, I3LCB2, P60899, A0A4X1VYD0, F1RKE4, A0A4X1TRS6, Q00403, P20226, P35269, P13984, P52655, P52657, P29083, P29084	P02281, P84233, P06897, P62799	0.234
232	8BYQ	EM	4.10	2023-05-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	198	RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W)	Abril-Garrido, J., Dienemann, C., Grabbe, F., Velychko, T., Lidschreiber, M., Wang, H., Cramer, P.	10.1016/j.molcel.2023.04.011	37148879	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	General transcription and DNA repair factor IIH helicase subunit XPB, TFIIH basal transcription factor complex helicase XPD subunit, General transcription factor IIH subunit 1, General transcription factor IIH subunit 4, General transcription factor IIH subunit 2, General transcription factor IIH subunit 3, General transcription factor IIH subunit 5, CDK-activating kinase assembly factor MAT1, Cyclin-dependent kinase 7, Cyclin-H, DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase II subunit RPB3, RNA polymerase II subunit D, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11-a, RNA polymerase II subunit K, Transcription initiation factor IIB, TATA-box-binding protein, General transcription factor IIF subunit 1, General transcription factor IIF subunit 2, Transcription initiation factor IIA subunit 1, Transcription initiation factor IIA subunit 2, General transcription factor IIE subunit 1, Transcription initiation factor IIE subunit beta	Transcription-associated, Transcription factors, DNA repair, RNA polymerases	P19447, P18074, P32780, Q92759, Q13888, Q13889, Q6ZYL4, P51948, P50613, P51946, A0A7M4DUC2, I3LGP4, I3LCH3, A0A287ADR4, I3LSI7, A0A4X1VEK9, A0A4X1VKG7, I3LCB2, P60899, A0A4X1VYD0, F1RKE4, A0A4X1TRS6, Q00403, P20226, P35269, P13984, P52655, P52657, P29083, P29084	P02281, P84233, P06897, P62799	0.187
233	8BZ1	EM	3.80	2023-05-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	198	RNA polymerase II core pre-initiation complex with the proximal +1 nucleosome (cPIC-Nuc10W)	Abril-Garrido, J., Dienemann, C., Grabbe, F., Velychko, T., Lidschreiber, M., Wang, H., Cramer, P.	10.1016/j.molcel.2023.04.011	37148879	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase II subunit RPB3, RNA polymerase II subunit D, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11-a, RNA polymerase II subunit K, Transcription initiation factor IIB, TATA-box-binding protein, General transcription factor IIF subunit 1, General transcription factor IIF subunit 2, Transcription initiation factor IIA subunit 1, Transcription initiation factor IIA subunit 2	Transcription-associated, Transcription factors, RNA polymerases	A0A8D1DPV6, I3LGP4, I3LCH3, A0A287ADR4, I3LSI7, A0A4X1VEK9, I3LJZ9, I3LCB2, P60899, A0A4X1VYD0, F1RKE4, A0A4X1TRS6, Q00403, P20226, P35269, P13984, P52655, P52657	P02281, P84233, P06897, P62799	0.244
234	8DK5	EM	2.71	2023-06-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			149	Structure of 187bp LIN28b nucleosome with site 0 mutation	Guan, R., Lian, T., Zhou, B.R., Wheeler, D., Bai, Y.	10.1016/j.molcel.2023.05.030	37327775	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Single-chain variable fragment			P62805, Q16778, Q16777, P68431	0.535
235	8EVG	EM	2.75	2023-11-01	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			147	162bp CX3CR1 nucleosome (further classified with better nucleosome end)	Tengfei, L., Ruifang, G., Yawen, B.		0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Single-chain variable fragment			P62805, Q16778, Q16777, P68431	0.531
236	8EVH	EM	2.85	2023-11-01	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			141	CX3CR1 nucleosome and wild type PU.1 complex	Lian, T., Guan, R., Zhou, B.R., Bai, Y.	10.1038/s41594-023-01189-z	38267599	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Single-chain variable fragment, Transcription factor PU.1	Transcription-associated, Transcription factors	P17433	P62805, Q16778, Q16777, P68431	0.509
237	8EVI	EM	2.64	2023-11-01	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			143	CX3CR1 nucleosome and PU.1 complex containing disulfide bond mutations	Lian, T., Guan, R., Zhou, B.R., Bai, Y.	10.1038/s41594-023-01189-z	38267599	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Single-chain variable fragment, Transcription factor PU.1	Transcription-associated, Transcription factors	P17433	P62805, Q16778, Q16777, P68431	0.559
238	8EVJ	EM	4.10	2023-11-01	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			138	CX3CR1 nucleosome bound PU.1 and C/EBPa	Lian, T., Guan, R., Zhou, B.R., Bai, Y.	10.1038/s41594-023-01189-z	38267599	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	ScFv, Transcription factor PU.1	Transcription-associated, Transcription factors	P17433	P62805, Q16778, Q16777, P68431	0.31
239	8G6Q	EM	3.41	2024-02-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	H2AK119ub-modified nucleosome ubiquitin position 1	Hicks, C.W., Rahman, S., Fields, J.K., Morgan, M.T., Wolberger, C.		0	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2024	Ubiquitin	Ubiquitin	P0CG47	P02281, P84233, P62799, Q6AZJ8	0.434
240	8G6S	EM	3.47	2024-02-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	H2AK119ub-modified nucleosome ubiquitin position 2	Hicks, C.W., Rahman, S., Fields, J.K., Morgan, M.T., Wolberger, C.		0	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2024	Ubiquitin	Ubiquitin	P0CG47	P02281, P84233, P62799, Q6AZJ8	0.445
241	8GPN	EM	3.20	2023-02-15	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		601	146	Human menin in complex with H3K79Me2 nucleosome	Lin, J., Wu, Y., Tian, G., Yu, D., Yang, E., Lam, W.H., Liu, Z., Jing, Y., Dang, S., Bao, X., Wong, J.W.H., Zhai, Y., Li, X.D.	10.1126/science.adc9318	36795828	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Isoform 2 of Menin	Transcription-associated, Histone_methylation_H3K4_writer, Histone PTM writers	O00255	P02281, P84233, P06897, P62799	0.459
242	8GUI	EM	2.81	2023-09-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Bre1-nucleosome complex (Model I)	Onishi, S., Uchiyama, K., Sato, K., Okada, C., Kobayashi, S., Hamada, K., Nishizawa, T., Nureki, O., Ogata, K., Sengoku, T.	10.1038/s41467-024-46910-8	38519511	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	E3 ubiquitin-protein ligase BRE1A, E3 ubiquitin-protein ligase BRE1B	Transcription-associated, E3 ubiquitin-protein ligation, Histone PTM writers, Histone_ubiquitination_H2BK120_writer	Q5VTR2, O75150	P62805, P0C0S8, P06899, P68431	0.532
243	8GUJ	EM	2.80	2023-09-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Bre1-nucleosome complex (Model II)	Onishi, S., Uchiyama, K., Sato, K., Okada, C., Kobayashi, S., Hamada, K., Nishizawa, T., Nureki, O., Ogata, K., Sengoku, T.	10.1038/s41467-024-46910-8	38519511	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	E3 ubiquitin-protein ligase BRE1A, E3 ubiquitin-protein ligase BRE1B	Transcription-associated, E3 ubiquitin-protein ligation, Histone PTM writers, Histone_ubiquitination_H2BK120_writer	Q5VTR2, O75150	P62805, P0C0S8, P06899, P68431	0.532
244	8GUK	EM	2.51	2023-09-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Human nucleosome core particle (free form)	Onishi, S., Uchiyama, K., Sato, K., Okada, C., Kobayashi, S., Hamada, K., Nishizawa, T., Nureki, O., Ogata, K., Sengoku, T.	10.1038/s41467-024-46910-8	38519511	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023				P62805, P0C0S8, P06899, P68431	0.588
245	8IHL	EM	7.64	2024-01-17	octamer, hexamer, hexamer	3	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	353	Overlapping tri-nucleosome	Nishimura, M., Fujii, T., Tanaka, H., Maehara, K., Morishima, K., Shimizu, M., Kobayashi, Y., Nozawa, K., Takizawa, Y., Sugiyama, M., Ohkawa, Y., Kurumizaka, H.	10.1038/s42003-023-05694-1	38191828	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024				P62805, P06899, P04908, P68431	0.109
246	8J6S	EM	3.80	2023-08-16	H3_H4_tetramer, H3_H4_tetramer	2	canonical_H3	canonical_H4				601	99	Cryo-EM structure of the single CAF-1 bound right-handed Di-tetrasome	Liu, C.P., Yu, Z., Xiong, J., Hu, J., Song, A., Ding, D., Yu, C., Yang, N., Wang, M., Yu, J., Hou, P., Zeng, K., Li, Z., Zhang, Z., Zhang, X., Li, W., Zhang, Z., Zhu, B., Li, G., Xu, R.M.	10.1126/science.add8673	37616371	Homo sapiens	Homo sapiens				2023	Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B	Histone chaperones, DNA repair, DNA replication, CAF-1	Q13111, Q13112	P62805, P68431	0.301
247	8J6T	EM	6.60	2023-08-16	H3_H4_tetramer, H3_H4_tetramer	2	canonical_H3	canonical_H4				601	92	Cryo-EM structure of the double CAF-1 bound right-handed Di-tetrasome	Liu, C.P., Yu, Z., Xiong, J., Hu, J., Song, A., Ding, D., Yu, C., Yang, N., Wang, M., Yu, J., Hou, P., Zeng, K., Li, Z., Zhang, Z., Zhang, X., Li, W., Zhang, Z., Zhu, B., Li, G., Xu, R.M.	10.1126/science.add8673	37616371	Homo sapiens	Homo sapiens				2023	Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B	Histone chaperones, DNA repair, DNA replication, CAF-1	Q13111, Q13112	P62805, P68431	0.166
248	8JHF	EM	3.68	2023-11-15	octamer	1	canonical_H3	canonical_H4	H2A.Z	canonical_H2B		601	160	Native SUV420H1 bound to 167-bp nucleosome	Lin, F., Zhang, R., Shao, W., Lei, C., Ma, M., Zhang, Y., Wen, Z., Li, W.	10.1038/s41421-023-00620-5	38052811	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Histone-lysine N-methyltransferase KMT5B	Transcription-associated, Histone_methylation_H4K20_writer, Heterochromatin-associated, Histone PTM writers	Q4FZB7	O60814, P62805, P0C0S5, P68431	0.433
249	8JHG	EM	3.58	2023-11-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	160	Native SUV420H1 bound to 167-bp nucleosome	Lin, F., Zhang, R., Shao, W., Lei, C., Ma, M., Zhang, Y., Wen, Z., Li, W.	10.1038/s41421-023-00620-5	38052811	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Histone-lysine N-methyltransferase KMT5B	Transcription-associated, Histone_methylation_H4K20_writer, Heterochromatin-associated, Histone PTM writers	Q4FZB7	P62805, O60814, P04908, P68431	0.456
250	8JL9	EM	2.65	2023-10-04	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601L	155	Cryo-EM structure of the human nucleosome with scFv	Oishi, T., Hatazawa, S., Kujirai, T., Kato, J., Kobayashi, Y., Ogasawara, M., Akatsu, M., Ehara, H., Sekine, S.I., Hayashi, G., Takizawa, Y., Kurumizaka, H.	10.1093/nar/gkad754	37718728	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023				P62805, P06899, P04908, P68431	0.569
251	8JND	EM	3.66	2024-03-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	156	The cryo-EM structure of the nonameric RAD51 ring bound to the nucleosome with the linker DNA binding	Shioi, T., Hatazawa, S., Oya, E., Hosoya, N., Kobayashi, W., Ogasawara, M., Kobayashi, T., Takizawa, Y., Kurumizaka, H.	10.1038/s41586-024-07196-4	38509361	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	DNA repair protein RAD51 homolog 1		Q06609	P62805, P06899, P04908, P68431	0.19
252	8JNE	EM	4.68	2024-03-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	156	The cryo-EM structure of the decameric RAD51 ring bound to the nucleosome without the linker DNA binding	Shioi, T., Hatazawa, S., Oya, E., Hosoya, N., Kobayashi, W., Ogasawara, M., Kobayashi, T., Takizawa, Y., Kurumizaka, H.	10.1038/s41586-024-07196-4	38509361	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	DNA repair protein RAD51 homolog 1		Q06609	P62805, P06899, P04908, P68431	0.13
253	8OF4	EM	2.94	2023-08-09	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Nucleosome Bound human SIRT6 (Composite)	Smirnova, E., Bignon, E., Schultz, P., Papai, G., Ben Shem, A.	10.7554/eLife.87989	38415718	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	NAD-dependent protein deacylase sirtuin-6	Histone PTM erasers, Histone_deacetylation, Histone_deacetylation_H3K9, DNA repair, Transcription-associated	Q8N6T7	P02281, P84233, P06897, P62799	0.446
254	8OSJ	EM	6.20	2023-05-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	128	Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 1)	Michael, A.K., Stoos, L., Crosby, P., Eggers, N., Nie, X.Y., Makasheva, K., Minnich, M., Healy, K.L., Weiss, J., Kempf, G., Cavadini, S., Kater, L., Seebacher, J., Vecchia, L., Chakraborty, D., Isbel, L., Grand, R.S., Andersch, F., Fribourgh, J.L., Schubeler, D., Zuber, J., Liu, A.C., Becker, P.B., Fierz, B., Partch, C.L., Menet, J.S., Thoma, N.H.	10.1038/s41586-023-06282-3	37407816	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Circadian locomoter output cycles protein kaput, Basic helix-loop-helix ARNT-like protein 1	Transcription-associated, Transcription factors	O08785, Q9WTL8	P62805, P06899, P04908, P68431	0.219
255	8OSK	EM	3.60	2023-05-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	124	Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (composite map)	Michael, A.K., Stoos, L., Crosby, P., Eggers, N., Nie, X.Y., Makasheva, K., Minnich, M., Healy, K.L., Weiss, J., Kempf, G., Cavadini, S., Kater, L., Seebacher, J., Vecchia, L., Chakraborty, D., Isbel, L., Grand, R.S., Andersch, F., Fribourgh, J.L., Schubeler, D., Zuber, J., Liu, A.C., Becker, P.B., Fierz, B., Partch, C.L., Menet, J.S., Thoma, N.H.	10.1038/s41586-023-06282-3	37407816	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Circadian locomoter output cycles protein kaput, Basic helix-loop-helix ARNT-like protein 1	Transcription-associated, Transcription factors	O08785, Q9WTL8	P62805, P06899, P04908, P68431	0.267
256	8OSL	EM	4.90	2023-05-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			147	Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 2, additional 3D classification and flexible refinement)	Michael, A.K., Stoos, L., Crosby, P., Eggers, N., Nie, X.Y., Makasheva, K., Minnich, M., Healy, K.L., Weiss, J., Kempf, G., Cavadini, S., Kater, L., Seebacher, J., Vecchia, L., Chakraborty, D., Isbel, L., Grand, R.S., Andersch, F., Fribourgh, J.L., Schubeler, D., Zuber, J., Liu, A.C., Becker, P.B., Fierz, B., Partch, C.L., Menet, J.S., Thoma, N.H.	10.1038/s41586-023-06282-3	37407816	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Circadian locomoter output cycles protein kaput, Basic helix-loop-helix ARNT-like protein 1	Transcription-associated, Transcription factors	O08785, Q9WTL8	P62805, P06899, P04908, P68431	0.177
257	8OTS	EM	3.30	2023-05-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	127	OCT4 and MYC-MAX co-bound to a nucleosome	Michael, A.K., Stoos, L., Crosby, P., Eggers, N., Nie, X.Y., Makasheva, K., Minnich, M., Healy, K.L., Weiss, J., Kempf, G., Cavadini, S., Kater, L., Seebacher, J., Vecchia, L., Chakraborty, D., Isbel, L., Grand, R.S., Andersch, F., Fribourgh, J.L., Schubeler, D., Zuber, J., Liu, A.C., Becker, P.B., Fierz, B., Partch, C.L., Menet, J.S., Thoma, N.H.	10.1038/s41586-023-06282-3	37407816	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Green fluorescent protein,POU domain, class 5, transcription factor 1, Myc proto-oncogene protein, Protein max	Transcription-associated, Transcription factors	P42212, P01106, P61244	P62805, P06899, P04908, P68431	0.404
258	8OX0	EM	2.52	2023-08-30	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		telomeric_human	145	Structure of apo telomeric nucleosome	Hu, H., van Roon, A.M., Ghanim, G.E., Ahsan, B., Oluwole, A.O., Peak-Chew, S.Y., Robinson, C.V., Nguyen, T.H.D.	10.1126/sciadv.adi4148	37624885	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023				P62805, P62807, P68431, Q93077	0.607
259	8OX1	EM	2.70	2023-08-30	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		telomeric_human	145	Structure of TRF1core in complex with telomeric nucleosome	Hu, H., van Roon, A.M., Ghanim, G.E., Ahsan, B., Oluwole, A.O., Peak-Chew, S.Y., Robinson, C.V., Nguyen, T.H.D.	10.1126/sciadv.adi4148	37624885	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Telomeric repeat-binding factor 1	Shelterin, DNA repair, Telomere-associated	P54274	P62805, P62807, P68431, Q93077	0.579
260	8SMW	EM	3.30	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 1)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077	P62805, P06899, P04908, P68431	0.526
261	8SMX	EM	3.20	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 2)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077	P62805, P06899, P04908, P68431	0.549
262	8SMY	EM	3.20	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 3)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077	P62805, P06899, P04908, P68431	0.544
263	8SMZ	EM	3.20	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (Class 4)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077	P62805, P06899, P04908, P68431	0.535
264	8SN0	EM	3.20	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 5)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077	P62805, P06899, P04908, P68431	0.547
265	8SN1	EM	3.30	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 6)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077	P62805, P06899, P04908, P68431	0.526
266	8SN2	EM	3.60	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c (UbcH5c chemically conjugated to histone H2A)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077	P62805, P06899, P04908, P68431	0.452
267	8SN3	EM	3.80	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 1)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3, Polyubiquitin-B	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Ubiquitin, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077, P0CG47	P62805, P06899, P04908, P68431	0.429
268	8SN4	EM	3.70	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 2)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3, Polyubiquitin-B	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Ubiquitin, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077, P0CG47	P62805, P06899, P04908, P68431	0.439
269	8SN5	EM	3.90	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 3)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3, Polyubiquitin-B	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Ubiquitin, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077, P0CG47	P62805, P06899, P04908, P68431	0.41
270	8SN6	EM	3.70	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 4)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3, Polyubiquitin-B	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Ubiquitin, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077, P0CG47	P62805, P06899, P04908, P68431	0.434
271	8SN7	EM	3.70	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 5)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3, Polyubiquitin-B	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Ubiquitin, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077, P0CG47	P62805, P06899, P04908, P68431	0.445
272	8SN8	EM	3.70	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 6)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3, Polyubiquitin-B	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Ubiquitin, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077, P0CG47	P62805, P06899, P04908, P68431	0.443
273	8SN9	EM	3.90	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c with backside ubiquitin (UbcH5c chemically conjugated to histone H2A) (class 1)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3, Polyubiquitin-B	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Ubiquitin, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077, P0CG47	P62805, P06899, P04908, P68431	0.424
274	8SNA	EM	4.00	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c with backside ubiquitin (UbcH5c chemically conjugated to histone H2A) (class 2)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3, Polyubiquitin-B	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Ubiquitin, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077, P0CG47	P62805, P06899, P04908, P68431	0.405
275	8SPS	EM	3.00	2023-06-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			147	High resolution structure of ESRRB nucleosome bound OCT4 at site a and site b	Guan, R., Lian, T., Zhou, B.R., Wheeler, D., Bai, Y.	10.1016/j.molcel.2023.05.030	37327775	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	ScFv, Maltodextrin-binding protein,POU domain, class 5, transcription factor 1	Transcription-associated, Transcription factors	Q01860	P62805, Q16778, Q16777, P68431	0.434
276	8SPU	EM	2.80	2023-06-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			149	Structure of ESRRB nucleosome bound OCT4 at site c	Guan, R., Lian, T., Zhou, B.R., Wheeler, D., Bai, Y.	10.1016/j.molcel.2023.05.030	37327775	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	ScFv, Maltodextrin-binding protein,POU domain, class 5, transcription factor 1	Transcription-associated, Transcription factors	Q01860	P62805, Q16778, Q16777, P68431	0.496
277	8SYP	EM	2.60	2023-11-01	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			147	Genomic CX3CR1 nucleosome	Lian, T., Guan, R., Zhou, B.R., Bai, Y.	10.1038/s41594-023-01189-z	38267599	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Single-chain variable fragment			P62805, Q16778, Q16777, P68431	0.559
278	8TOF	EM	2.80	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	176	Rpd3S bound to an H3K36Cme3 modified nucleosome	Markert, J.W., Vos, S.M., Farnung, L.	10.1038/s41467-023-43968-8	38065958	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2024	Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1, Rco1, histone N-terminal tail	Histone PTM erasers, Histone_deacetylation, Rpd3, DNA repair, Telomere-associated, Histone_acetylation_writer, Transcription-associated, Histone PTM writers, NuA4	P22579, P32561, Q12432, Q04779	P02281, P02302, P06897, P62799	0.464
279	8TXV	EM	3.80	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 (Class 1)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Polyubiquitin-B	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Ubiquitin, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P0CG47	P62805, P62807, P04908, P68431	0.432
280	8TXW	EM	3.60	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 (Class 2)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Polyubiquitin-B	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Ubiquitin, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P0CG47	P62805, P62807, P04908, P68431	0.455
281	8TXX	EM	3.70	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 (Class 3)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Polyubiquitin-B	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Ubiquitin, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P0CG47	P62805, P62807, P04908, P68431	0.438
282	8U13	EM	3.80	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A lysine 15 in complex with RNF168-UbcH5c (class 1)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5	P62805, P62807, P04908, P68431	0.381
283	8U14	EM	3.90	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A lysine 15 in complex with RNF168-UbcH5c (class 2)	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077	P62805, P06899, P04908, P68431	0.352
284	8UPF	EM	3.20	2024-01-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of the human nucleosome core particle in complex with RNF168-UbcH5c	Hu, Q., Zhao, D., Cui, G., Bhandari, J., Thompson, J.R., Botuyan, M.V., Mer, G.	10.1016/j.molcel.2023.12.036	38242129	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	E3 ubiquitin-protein ligase RNF168, Ubiquitin-conjugating enzyme E2 D3	Histone_ubiquitination_H2AK15_writer, E3 ubiquitin-protein ligation, DNA repair, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_ubiquitination_H2AK13_reader, Transcription-associated, Histone PTM writers, Histone_ubiquitination_H2AK13_writer	Q8IYW5, P61077	P62805, P06899, P04908, P68431	0.464
285	8X15	EM	3.20	2024-03-06	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	137	Structure of nucleosome-bound SRCAP-C in the apo state	Yu, J., Wang, Q., Yu, Z., Li, W., Wang, L., Xu, Y.		0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	Helicase SRCAP, Vacuolar protein sorting-associated protein 72 homolog, Actin-related protein 6, Zinc finger HIT domain-containing protein 1, RuvB-like 1, RuvB-like 2, Actin, cytoplasmic 1, N-terminally processed, Actin-like protein 6A, DNA methyltransferase 1-associated protein 1, YEATS domain-containing protein 4	Transcription-associated, SWI/SNF, Chromatin remodelers, INO80	Q6ZRS2, Q15906, Q9GZN1, O43257, Q9Y265, Q9Y230, P60709, O96019, Q9NPF5, O95619	P62805, P62807, P68431, Q93077	0.218
286	8X19	EM	3.20	2024-03-06	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Structure of nucleosome-bound SRCAP-C in the ADP-BeFx-bound state	Yu, J., Wang, Q., Yu, Z., Li, W., Wang, L., Xu, Y.		0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	Helicase SRCAP, Vacuolar protein sorting-associated protein 72 homolog, Actin-related protein 6, Zinc finger HIT domain-containing protein 1, RuvB-like 1, RuvB-like 2, Actin, cytoplasmic 1, Actin-like protein 6A, DNA methyltransferase 1-associated protein 1, YEATS domain-containing protein 4	Transcription-associated, SWI/SNF, Chromatin remodelers, INO80	Q6ZRS2, Q15906, Q9GZN1, O43257, Q9Y265, Q9Y230, P60709, O96019, Q9NPF5, O95619	P62805, P62807, P68431, Q93077	0.292
287	8X1C	EM	3.20	2024-03-06	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Structure of nucleosome-bound SRCAP-C in the ADP-bound state	Yu, J., Wang, Q., Yu, Z., Li, W., Wang, L., Xu, Y.		0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	Helicase SRCAP, Vacuolar protein sorting-associated protein 72 homolog, Actin-related protein 6, Zinc finger HIT domain-containing protein 1, RuvB-like 1, RuvB-like 2, Actin, cytoplasmic 1, Actin-like protein 6A, DNA methyltransferase 1-associated protein 1, YEATS domain-containing protein 4	Transcription-associated, SWI/SNF, Chromatin remodelers, INO80	Q6ZRS2, Q15906, Q9GZN1, O43257, Q9Y265, Q9Y230, P60709, O96019, Q9NPF5, O95619	P62805, P62807, P68431, Q93077	0.297
288	8XBT	EM	4.12	2024-03-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	156	The cryo-EM structure of the octameric RAD51 ring bound to the nucleosome with the linker DNA binding	Shioi, T., Hatazawa, S., Oya, E., Hosoya, N., Kobayashi, W., Ogasawara, M., Kobayashi, T., Takizawa, Y., Kurumizaka, H.	10.1038/s41586-024-07196-4	38509361	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	DNA repair protein RAD51 homolog 1		Q06609	P62805, P06899, P04908, P68431	0.199
289	3AYW	X-ray	2.90	2011-09-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal Structure of Human Nucleosome Core Particle Containing H3K56Q mutation	Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1021/bi201021h	21812398	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P04908, P68431	-
290	3AZE	X-ray	3.00	2011-09-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal Structure of Human Nucleosome Core Particle Containing H3K64Q mutation	Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1021/bi201021h	21812398	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P04908, P68431	-
291	3AZF	X-ray	2.70	2011-09-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal Structure of Human Nucleosome Core Particle Containing H3K79Q mutation	Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1021/bi201021h	21812398	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P04908, P68431	-
292	3AZG	X-ray	2.40	2011-09-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal Structure of Human Nucleosome Core Particle Containing H3K115Q mutation	Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1021/bi201021h	21812398	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P04908, P68431	-
293	3AZH	X-ray	3.49	2011-09-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal Structure of Human Nucleosome Core Particle Containing H3K122Q mutation	Iwasaki, W., Tachiwana, H., Kawaguchi, K., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1021/bi201021h	21812398	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P04908, P68431	-
294	4KUD	X-ray	3.20	2013-08-07	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		alphasat_146	146	Crystal structure of N-terminal acetylated Sir3 BAH domain D205N mutant in complex with yeast nucleosome core particle	Yang, D., Fang, Q., Wang, M., Ren, R., Wang, H., He, M., Sun, Y., Yang, N., Xu, R.M.	10.1038/nsmb.2637	23934152	Saccharomyces cerevisiae	Saccharomyces cerevisiae	Saccharomyces cerevisiae	Saccharomyces cerevisiae		2013	Regulatory protein SIR3	Transcription-associated	P06701	P02309, P61830, P04912, P02293	-
295	7A08	EM	3.11	2020-09-23	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601	132	CryoEM Structure of cGAS Nucleosome complex	Michalski, S., de Oliveira Mann, C.C., Stafford, C.A., Witte, G., Bartho, J., Lammens, K., Hornung, V., Hopfner, K.P.	10.1038/s41586-020-2748-0	32911480	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Cyclic GMP-AMP synthase	DNA repair, Antiviral defense, 2'3'-cGAMP, Synthesis of second messengers	Q8C6L5	P62805, P84243, P62807, Q93077	0.533
296	7K7G	EM	4.20	2021-03-31	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		601_modified	123	nucleosome and Gal4 complex	Guan, R., Lian, T., Zhou, B.R., He, E., Wu, C., Singleton, M., Bai, Y.	10.1038/s41467-021-21985-9	33741944	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)		2021	Centromere DNA-binding protein complex CBF3 subunit B	Kinetochore, Centromere-associated, Nuclear division, CBF3	P40969	P02309, P61830, P04911, P02293	0.3
297	8HE5	EM	6.95	2023-07-05	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	154	RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleosome	Osumi, K., Kujirai, T., Ehara, H., Ogasawara, M., Kinoshita, C., Saotome, M., Kagawa, W., Sekine, S.I., Takizawa, Y., Kurumizaka, H.	10.1016/j.jmb.2023.168130	37120012	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II third largest subunit B44, part of central core, RNA polymerase II subunit B32, DNA-directed RNA polymerases I, II, and III subunit RPABC1, RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III, RNA polymerase II subunit, DNA-directed RNA polymerases I, II, and III subunit RPABC3, RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III, RNA polymerase II subunit B12.5, RNA polymerase subunit ABC10-alpha, Transcription elongation factor 1 homolog, DNA repair protein	Transcription-associated, Transcription factors, RNA polymerases, DNA repair	C4R4Y0, C4QZQ7, C4R7L2, C4R2U9, C4R3P8, C4R1V1, C4R9A1, C4R273, C4QY79, C4R009, C4R3Z5, F2QMI1, C4QZ45, C4R198	P62805, P06899, P04908, P68431	0.105
298	8WH5	EM	3.58	2024-04-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	133	Structure of DDM1-nucleosome complex in the apo state	Liu, Y., Zhang, Z., Hu, H., Chen, W., Zhang, F., Wang, Q., Wang, C., Yan, K., Du, J.	10.1038/s41477-024-01640-z	38413824	Arabidopsis thaliana	Arabidopsis thaliana	Arabidopsis thaliana	Arabidopsis thaliana		2024	ATP-dependent DNA helicase DDM1	Heterochromatin-associated, Chromatin remodeling	Q9XFH4	P59259, O23629, P59226, Q9LD28	-
299	8WH8	EM	3.60	2024-04-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	125	Structure of DDM1-nucleosome complex in ADP state	Liu, Y., Zhang, Z., Hu, H., Chen, W., Zhang, F., Wang, Q., Wang, C., Yan, K., Du, J.	10.1038/s41477-024-01640-z	38413824	Arabidopsis thaliana	Arabidopsis thaliana	Arabidopsis thaliana	Arabidopsis thaliana		2024	ATP-dependent DNA helicase DDM1	Heterochromatin-associated, Chromatin remodeling	Q9XFH4	P59259, O23629, P59226, Q9LD28	0.403
300	8WH9	EM	3.31	2024-04-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	142	Structure of DDM1-nucleosome complex in ADP-BeFx state	Liu, Y., Zhang, Z., Hu, H., Chen, W., Zhang, F., Wang, Q., Wang, C., Yan, K., Du, J.	10.1038/s41477-024-01640-z	38413824	Arabidopsis thaliana	Arabidopsis thaliana	Arabidopsis thaliana	Arabidopsis thaliana		2024	ATP-dependent DNA helicase DDM1	Heterochromatin-associated, Chromatin remodeling	Q9XFH4	P59259, O23629, P59226, Q9LD28	0.336
301	8WHA	EM	4.05	2024-04-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	142	Structure of DDM1-nucleosome complex in the ADP-BeFx state with DDM1 bound to SHL2 and SHL-2	Liu, Y., Zhang, Z., Hu, H., Chen, W., Zhang, F., Wang, Q., Wang, C., Yan, K., Du, J.	10.1038/s41477-024-01640-z	38413824	Arabidopsis thaliana	Arabidopsis thaliana	Arabidopsis thaliana	Arabidopsis thaliana		2024	ATP-dependent DNA helicase DDM1	Heterochromatin-associated, Chromatin remodeling	Q9XFH4	P59259, O23629, P59226, Q9LD28	0.306
302	8WHB	EM	3.17	2024-04-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	134	Structure of nucleosome core particle of Arabidopsis thaliana	Liu, Y., Zhang, Z., Hu, H., Chen, W., Zhang, F., Wang, Q., Wang, C., Yan, K., Du, J.	10.1038/s41477-024-01640-z	38413824	Arabidopsis thaliana	Arabidopsis thaliana	Arabidopsis thaliana	Arabidopsis thaliana		2024				P59259, O23629, P59226, Q9LD28	0.5
303	1KX3	X-ray	2.00	2002-12-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	X-Ray Structure of the Nucleosome Core Particle, NCP146, at 2.0 A Resolution	Davey, C.A., Sargent, D.F., Luger, K., Maeder, A.W., Richmond, T.J.	10.1016/S0022-2836(02)00386-8	12079350	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2002				P02281, P84233, P06897, P62799	-
304	1KX4	X-ray	2.60	2002-12-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146b	146	X-Ray Structure of the Nucleosome Core Particle, NCP146b, at 2.6 A Resolution	Davey, C.A., Sargent, D.F., Luger, K., Maeder, A.W., Richmond, T.J.	10.1016/S0022-2836(02)00386-8	12079350	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2002				P02281, P84233, P06897, P62799	-
305	1KX5	X-ray	1.94	2002-12-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	X-Ray Structure of the Nucleosome Core Particle, NCP147, at 1.9 A Resolution	Davey, C.A., Sargent, D.F., Luger, K., Maeder, A.W., Richmond, T.J.	10.1016/S0022-2836(02)00386-8	12079350	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2002				P02281, P84233, P06897, P62799	-
306	1S32	X-ray	2.05	2004-05-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Molecular Recognition of the Nucleosomal 'Supergroove'	Edayathumangalam, R.S., Weyermann, P., Gottesfeld, J.M., Dervan, P.B., Luger, K.	10.1073/pnas.0401743101	15100411	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2004				P02281, P84233, P06897, P62799	-
307	1ZBB	X-ray	9.00	2005-07-12	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	347	Structure of the 4_601_167 Tetranucleosome	Schalch, T., Duda, S., Sargent, D.F., Richmond, T.J.	10.1038/nature03686	16001076	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2005				P02281, P84233, P06897, P62799	-
308	2FJ7	X-ray	3.20	2006-09-26	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_A16	147	Crystal structure of Nucleosome Core Particle Containing a Poly (dA.dT) Sequence Element	Bao, Y., White, C.L., Luger, K.	10.1016/j.jmb.2006.06.051	16860337	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2006				P02281, P84233, P06897, P62799	-
309	2NQB	X-ray	2.30	2007-09-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Drosophila Nucleosome Structure	Chakravarthy, S., Luger, K.		0	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster		2007				P02299, P02283, P84051, P84040	-
310	2NZD	X-ray	2.65	2007-04-10	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Nucleosome core particle containing 145 bp of DNA	Ong, M.S., Richmond, T.J., Davey, C.A.	10.1016/j.jmb.2007.02.062	17379244	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2007				P02281, P84233, P06897, P62799	-
311	2PYO	X-ray	2.43	2007-11-06	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	Drosophila nucleosome core	Clapier, C.R., Chakravarthy, S., Petosa, C., Fernandez-Tornero, C., Luger, K., Muller, C.W.	10.1002/prot.21720	17957772	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster		2007				P02299, P02283, P84051, P84040	-
312	3B6F	X-ray	3.45	2007-12-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	Nucleosome core particle treated with cisplatin	Wu, B., Droge, P., Davey, C.A.	10.1038/nchembio.2007.58	18157123	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2007				P02281, P84233, P06897, P62799	-
313	3B6G	X-ray	3.45	2007-12-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	Nucleosome core particle treated with oxaliplatin	Wu, B., Droge, P., Davey, C.A.	10.1038/nchembio.2007.58	18157123	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2007				P02281, P84233, P06897, P62799	-
314	3C1B	X-ray	2.20	2008-10-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin structure	Lu, X., Simon, M.D., Chodaparambil, J.V., Hansen, J.C., Shokat, K.M., Luger, K.	10.1038/nsmb.1489	18794842	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus (Silurana) tropicalis		2008				Q28D68, P84233, P06897, P62799	-
315	3KUY	X-ray	2.90	2010-01-05	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	DNA Stretching in the Nucleosome Facilitates Alkylation by an Intercalating Antitumor Agent	Davey, G.E., Wu, B., Dong, Y., Surana, U., Davey, C.A.	10.1093/nar/gkp1174	20026584	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2010				P02281, P84233, P06897, P62799	-
316	3LJA	X-ray	2.75	2010-04-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	Using Soft X-Rays for a Detailed Picture of Divalent Metal Binding in the Nucleosome	Wu, B., Davey, C.A.	10.1016/j.jmb.2010.03.038	20350553	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2010				P02281, P84233, P06897, P62799	-
317	3LZ0	X-ray	2.50	2010-09-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 1)	Vasudevan, D., Chua, E.Y., Davey, C.A.	10.1016/j.jmb.2010.08.039	20800598	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2010				P02281, P84233, P62799, Q6AZJ8	-
318	3LZ1	X-ray	2.50	2010-09-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 2)	Vasudevan, D., Chua, E.Y., Davey, C.A.	10.1016/j.jmb.2010.08.039	20800598	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2010				P02281, P84233, P62799, Q6AZJ8	-
319	3MGP	X-ray	2.44	2010-06-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	Binding of Cobalt ions to the Nucleosome Core Particle	Mohideen, K., Muhammad, R., Davey, C.A.	10.1093/nar/gkq420	20494975	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2010				P02281, P84233, P62799, Q6AZJ8	-
320	3MGQ	X-ray	2.65	2010-06-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	Binding of Nickel ions to the Nucleosome Core Particle	Mohideen, K., Muhammad, R., Davey, C.A.	10.1093/nar/gkq420	20494975	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2010				P02281, P84233, P62799, Q6AZJ8	-
321	3MGR	X-ray	2.30	2010-06-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	Binding of Rubidium ions to the Nucleosome Core Particle	Mohideen, K., Muhammad, R., Davey, C.A.	10.1093/nar/gkq420	20494975	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2010				P02281, P84233, P62799, Q6AZJ8	-
322	3MGS	X-ray	3.15	2010-06-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	Binding of Cesium ions to the Nucleosome Core particle	Mohideen, K., Muhammad, R., Davey, C.A.	10.1093/nar/gkq420	20494975	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2010				P02281, P84233, P62799, Q6AZJ8	-
323	3MNN	X-ray	2.50	2011-04-06	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	A Ruthenium Antitumour Agent Forms Specific Histone Protein Adducts in the Nucleosome Core	Wu, B., Ong, M.S., Groessl, M., Adhireksan, Z., Hartinger, C.G., Dyson, P.J., Davey, C.A.	10.1002/chem.201100298	21344528	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2011				P02281, P84233, P06897, P62799	-
324	3MVD	X-ray	2.90	2010-08-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Crystal structure of the chromatin factor RCC1 in complex with the nucleosome core particle	Makde, R.D., England, J.R., Yennawar, H.P., Tan, S.	10.1038/nature09321	20739938	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2010	Regulator of chromosome condensation	Nuclear division	P25171	P02281, P84233, P62799, Q6AZJ8	-
325	3O62	X-ray	3.22	2011-01-05	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Nucleosome core particle modified with a cisplatin 1,3-cis-{Pt(NH3)2}2+-d(GpTpG) intrastrand cross-link	Todd, R.C., Lippard, S.J.	10.1016/j.chembiol.2010.10.018	21168769	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2011				P02281, P84233, P06897, P62799	-
326	3REH	X-ray	2.50	2012-03-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	2.5 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 145 bp Alpha-Satellite DNA (NCP145)	Wu, B., Davey, G.E., Nazarov, A.A., Dyson, P.J., Davey, C.A.	10.1093/nar/gkr491	21724603	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2012				P02281, P84233, P06897, P62799	-
327	3REI	X-ray	2.65	2012-03-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	2.65 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 145 bp Alpha-Satellite DNA (NCP145) Derivatized with Triamminechloroplatinum(II) Chloride	Wu, B., Davey, G.E., Nazarov, A.A., Dyson, P.J., Davey, C.A.	10.1093/nar/gkr491	21724603	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2012				P02281, P84233, P06897, P62799	-
328	3REJ	X-ray	2.55	2012-03-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146b	146	2.55 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b)	Wu, B., Davey, G.E., Nazarov, A.A., Dyson, P.J., Davey, C.A.	10.1093/nar/gkr491	21724603	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2012				P02281, P84233, P06897, P62799	-
329	3REK	X-ray	2.60	2012-03-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146b	146	2.6 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Oxaliplatin	Wu, B., Davey, G.E., Nazarov, A.A., Dyson, P.J., Davey, C.A.	10.1093/nar/gkr491	21724603	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2012				P02281, P84233, P06897, P62799	-
330	3REL	X-ray	2.70	2012-03-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146b	146	2.7 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Triamminechloroplatinum(II) Chloride	Wu, B., Davey, G.E., Nazarov, A.A., Dyson, P.J., Davey, C.A.	10.1093/nar/gkr491	21724603	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2012				P02281, P84233, P06897, P62799	-
331	3TU4	X-ray	3.00	2011-11-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Crystal structure of the Sir3 BAH domain in complex with a nucleosome core particle.	Armache, K.J., Garlick, J.D., Canzio, D., Narlikar, G.J., Kingston, R.E.	10.1126/science.1210915	22096199	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2011	Regulatory protein SIR3	Transcription-associated	P06701	P02281, P84233, P06897, P62799	-
332	3UT9	X-ray	2.20	2012-04-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601L	145	Crystal Structure of Nucleosome Core Particle Assembled with a Palindromic Widom '601' Derivative (NCP-601L)	Chua, E.Y.D., Vasudevan, D., Davey, G.E., Wu, B., Davey, C.A.	10.1093/nar/gks261	22453276	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2012				P02281, P84233, P06897, P62799	-
333	3UTA	X-ray	2.07	2012-04-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Crystal Structure of Nucleosome Core Particle Assembled with an Alpha-Satellite Sequence Containing Two TTAAA elements (NCP-TA2)	Chua, E.Y.D., Vasudevan, D., Davey, G.E., Wu, B., Davey, C.A.	10.1093/nar/gks261	22453276	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2012				P02281, P84233, P06897, P62799	-
334	3UTB	X-ray	2.20	2012-04-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146b	146	Crystal Structure of Nucleosome Core Particle Assembled with the 146b Alpha-Satellite Sequence (NCP146b)	Chua, E.Y.D., Vasudevan, D., Davey, G.E., Wu, B., Davey, C.A.	10.1093/nar/gks261	22453276	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2012				P02281, P84233, P06897, P62799	-
335	3X1S	X-ray	2.80	2015-09-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal structure of the nucleosome core particle	Padavattan, S., Shinagawa, T., Hasegawa, K., Kumasaka, T., Ishii, S., Kumarevel, T.	10.1016/j.bbrc.2015.07.070	26188507	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2015				P62805, P04908, P68431, P33778	-
336	3X1T	X-ray	2.81	2015-09-23	octamer	1	canonical_H3	canonical_H4	H2A.1	H2B.1		alphasat_146	146	Crystal structure of nucleosome core particle consisting of mouse testis specific histone variants H2aa and H2ba	Padavattan, S., Shinagawa, T., Hasegawa, K., Kumasaka, T., Ishii, S., Kumarevel, T.	10.1016/j.bbrc.2015.07.070	26188507	Homo sapiens	Homo sapiens	Mus musculus	Mus musculus		2015				Q8CGP4, P62805, P70696, P68431	-
337	3X1U	X-ray	3.25	2015-09-23	octamer	1	canonical_H3	canonical_H4	H2A.1	canonical_H2B		alphasat_146	146	Crystal structure of nucleosome core particle in the presence of histone variants involved in reprogramming	Padavattan, S., Shinagawa, T., Hasegawa, K., Kumasaka, T., Ishii, S., Kumarevel, T.	10.1016/j.bbrc.2015.07.070	26188507	Homo sapiens	Homo sapiens	Mus musculus	Homo sapiens		2015				Q8CGP4, P62805, P68431, P33778	-
338	3X1V	X-ray	2.92	2015-09-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A	H2B.1		alphasat_146	146	Crystal structure of nucleosome core particle in the presence of histone variant involved in reprogramming	Padavattan, S., Shinagawa, T., Hasegawa, K., Kumasaka, T., Ishii, S., Kumarevel, T.	10.1016/j.bbrc.2015.07.070	26188507	Homo sapiens	Homo sapiens	Homo sapiens	Mus musculus		2015				P62805, P70696, P04908, P68431	-
339	4J8U	X-ray	2.38	2013-04-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	X-ray structure of NCP145 with chlorido(eta-6-p-cymene)(N-phenyl-2-pyridinecarbothioamide)osmium(II)	Meier, S.M., Hanif, M., Adhireksan, Z., Pichler, V., Novak, M., Jirkovsky, E., Jakupec, M.A., Arion, V.B., Davey, C.A., Keppler, B.K., Hartinger, C.G.	10.1039/C3SC22294B	0	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2013				P02281, P84233, P06897, P62799	-
340	4J8V	X-ray	2.58	2013-05-08	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	X-ray structure of NCP145 with bound chlorido(eta-6-p-cymene)(N-phenyl-2-pyridinecarbothioamide)ruthenium(II)	Meier, S.M., Hanif, M., Adhireksan, Z., Pichler, V., Novak, M., Jirkovsky, E., Jakupec, M.A., Arion, V.B., Davey, C.A., Keppler, B.K., Hartinger, C.G.	10.1039/C3SC22294B	0	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2013				P02281, P84233, P06897, P62799	-
341	4J8W	X-ray	2.41	2013-04-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	X-ray structure of NCP145 with chlorido(eta-6-p-cymene)(N-fluorophenyl-2-pyridinecarbothioamide)osmium(II)	Meier, S.M., Hanif, M., Adhireksan, Z., Pichler, V., Novak, M., Jirkovsky, E., Jakupec, M.A., Arion, V.B., Davey, C.A., Keppler, B.K., Hartinger, C.G.	10.1039/C3SC22294B	0	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2013				P02281, P84233, P06897, P62799	-
342	4J8X	X-ray	2.87	2013-05-08	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	X-ray structure of NCP145 with bound chlorido(eta-6-p-cymene)(N-fluorophenyl-2-pyridinecarbothioamide)ruthenium(II)	Meier, S.M., Hanif, M., Adhireksan, Z., Pichler, V., Novak, M., Jirkovsky, E., Jakupec, M.A., Arion, V.B., Davey, C.A., Keppler, B.K., Hartinger, C.G.	10.1039/C3SC22294B	0	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2013				P02281, P84233, P06897, P62799	-
343	4R8P	X-ray	3.28	2014-11-05	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	144	Crystal structure of the Ring1B/Bmi1/UbcH5c PRC1 ubiquitylation module bound to the nucleosome core particle	McGinty, R.K., Henrici, R.C., Tan, S.	10.1038/nature13890	25355358	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2014	Polycomb complex protein BMI-1, E3 ubiquitin-protein ligase RING2, Ubiquitin-conjugating enzyme E2 D3	E3 ubiquitin-protein ligation, Polycomb, Histone_ubiquitination_H2AK119_writer, Transcription-associated, Histone PTM writers	P35226, Q99496	P02281, P84233, P06897, P62799	-
344	4WU8	X-ray	2.45	2015-09-02	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Structure of trPtNAP-NCP145	Chua, E.Y., Davey, G.E., Chin, C.F., Droge, P., Ang, W.H., Davey, C.A.	10.1093/nar/gkv356	25916851	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2015				P02281, P84233, P06897, P62799	-
345	4WU9	X-ray	2.60	2015-09-02	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Structure of cisPtNAP-NCP145	Chua, E.Y., Davey, G.E., Chin, C.F., Droge, P., Ang, W.H., Davey, C.A.	10.1093/nar/gkv356	25916851	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2015				P02281, P84233, P06897, P62799	-
346	4XUJ	X-ray	3.18	2016-01-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Nucleosome core particle containing adducts from treatment with a thiomorpholine-substituted [(eta-6-p-cymene)Ru(3-hydroxy-2-pyridone)Cl] compound	Hanif, M., Meier, S.M., Adhireksan, Z., Henke, H., Martic, S., Labib, M., Kandioller, W., Jakupec, M.A., Kraatz, H.B., Davey, C.A., Keppler, B.K., Hartinger, C.G.		0	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2016				P02281, P84233, P06897, P62799	-
347	5CP6	X-ray	2.60	2016-06-01	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Nucleosome Core Particle with Adducts from the Anticancer Compound, [(eta6-5,8,9,10-tetrahydroanthracene)Ru(ethylenediamine)Cl][PF6]	Ma, Z., Palermo, G., Adhireksan, Z., Murray, B.S., von Erlach, T., Dyson, P.J., Rothlisberger, U., Davey, C.A.	10.1002/anie.201602145	27184539	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2016				P02281, P84233, P06897, P62799	-
348	5DNM	X-ray	2.81	2016-09-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Nucleosome core particle containing adducts of ruthenium(II)-toluene PTA complex	Adhireksan, Z., Palermo, G., Riedel, T., Ma, Z., Muhammad, R., Rothlisberger, U., Dyson, P.J., Davey, C.A.	10.1038/ncomms14860	28358030	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2016				P02281, P84233, P06897, P62799	-
349	5DNN	X-ray	2.80	2016-09-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Nucleosome core particle containing adducts of gold(I)-triethylphosphane and ruthenium(II)-toluene PTA complexes	Adhireksan, Z., Palermo, G., Riedel, T., Ma, Z., Muhammad, R., Rothlisberger, U., Dyson, P.J., Davey, C.A.	10.1038/ncomms14860	28358030	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2016				P02281, P84233, P06897, P62799	-
350	5GSU	X-ray	3.10	2017-02-15	octamer	1	canonical_H3	canonical_H4	H2A.1	H2B.1		alphasat_146	146	Crystal structure of nucleosome core particle consisting of human testis-specific histone variants, Th2A and Th2B	Padavattan, S., Thiruselvam, V., Shinagawa, T., Hasegawa, K., Kumasaka, T., Ishii, S., Kumarevel, T.	10.1016/j.bpc.2016.11.013	27992841	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2017				Q96QV6, P62805, P68431, Q96A08	-
351	5GT0	X-ray	2.82	2017-02-15	octamer	1	canonical_H3	canonical_H4	H2A.1	canonical_H2B		alphasat_146	146	Crystal structure of nucleosome complex with human testis-specific histone variants, Th2a	Padavattan, S., Thiruselvam, V., Shinagawa, T., Hasegawa, K., Kumasaka, T., Ishii, S., Kumarevel, T.	10.1016/j.bpc.2016.11.013	27992841	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2017				Q96QV6, P62805, P62807, P68431	-
352	5GT3	X-ray	2.91	2017-02-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	H2B.1		alphasat_146	146	Crystal structure of nucleosome particle in the presence of human testis-specific histone variant, hTh2b	Padavattan, S., Thiruselvam, V., Shinagawa, T., Hasegawa, K., Kumasaka, T., Ishii, S., Kumarevel, T.	10.1016/j.bpc.2016.11.013	27992841	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2017				Q96A08, P62805, P68431, P20671	-
353	5HQ2	X-ray	4.50	2016-03-23	split_octasome	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	73	Structural model of Set8 histone H4 Lys20 methyltransferase bound to nucleosome core particle	Girish, T.S., McGinty, R.K., Tan, S.	10.1016/j.jmb.2016.02.025	26953260	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2016	Guanine nucleotide exchange factor SRM1, N-lysine methyltransferase SETD8	Histone_methylation_H4K20_writer, Heterochromatin-associated, Transcription-associated, Nuclear division, Histone PTM writers	P21827, Q9NQR1	P02281, P84233, P06897, P62799	-
354	5OXV	X-ray	6.72	2017-10-11	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	311	Structure of the 4_601_157 tetranucleosome (C2 form)	Ekundayo, B., Richmond, T.J., Schalch, T.	10.1016/j.jmb.2017.09.002	28893533	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017				P02281, P84233, P06897, P62799	-
355	5OY7	X-ray	5.77	2017-09-20	octamer, octamer, octamer, octamer	4	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	619	Structure of the 4_601_157 tetranucleosome (P1 form)	Ekundayo, B., Richmond, T.J., Schalch, T.	10.1016/j.jmb.2017.09.002	28893533	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017				P02281, P84233, P06897, P62799	-
356	5X0Y	EM	4.69	2017-04-19	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Complex of Snf2-Nucleosome complex with Snf2 bound to SHL2 of the nucleosome	Liu, X., Li, M., Xia, X., Li, X., Chen, Z.	10.1038/nature22036	28424519	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017	Transcription regulatory protein SNF2	Transcription-associated, Chromatin remodelers, SWI/SNF	P22082	P02281, P84233, P06897, P62799	0.315
357	5XF6	X-ray	2.63	2017-10-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having an ethylenediamine linker	Davey, G.E., Adhireksan, Z., Ma, Z., Riedel, T., Sharma, D., Padavattan, S., Rhodes, D., Ludwig, A., Sandin, S., Murray, B.S., Dyson, P.J., Davey, C.A.	10.1038/s41467-017-01680-4	29146919	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017				P02281, P84233, P06897, P62799	-
358	5XM1	X-ray	3.45	2018-03-07	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The mouse nucleosome structure containing H2A, H2B type3-A, H3mm7, and H4	Harada, A., Maehara, K., Ono, Y., Taguchi, H., Yoshioka, K., Kitajima, Y., Xie, Y., Sato, Y., Iwasaki, T., Nogami, J., Okada, S., Komatsu, T., Semba, Y., Takemoto, T., Kimura, H., Kurumizaka, H., Ohkawa, Y.	10.1038/s41467-018-03845-1	29643389	Mus musculus	Mus musculus	Mus musculus	Mus musculus		2018				Q9D2U9, P84244, C0HKE1, P62806	-
359	5Z3L	EM	4.31	2019-04-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Structure of Snf2-nucleosome complex in apo state	Li, M., Xia, X., Tian, Y., Jia, Q., Liu, X., Lu, Y., Li, M., Li, X., Chen, Z.	10.1038/s41586-019-1029-2	30867599	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Transcription regulatory protein SNF2	Transcription-associated, Chromatin remodelers, SWI/SNF	P22082	P02281, P84233, P06897, P62799	0.261
360	5Z3O	EM	3.62	2019-04-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Structure of Snf2-nucleosome complex in ADP state	Li, M., Xia, X., Tian, Y., Jia, Q., Liu, X., Lu, Y., Li, M., Li, X., Chen, Z.	10.1038/s41586-019-1029-2	30867599	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Transcription regulatory protein SNF2	Transcription-associated, Chromatin remodelers, SWI/SNF	P22082	P02281, P84233, P06897, P62799	0.349
361	5Z3U	EM	4.31	2019-05-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Structure of Snf2-nucleosome complex at shl2 in ADP BeFx state	Li, M., Xia, X., Tian, Y., Jia, Q., Liu, X., Lu, Y., Li, M., Li, X., Chen, Z.	10.1038/s41586-019-1029-2	30867599	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Transcription regulatory protein SNF2	Transcription-associated, Chromatin remodelers, SWI/SNF	P22082	P02281, P84233, P62799, Q6AZJ8	0.372
362	5Z3V	EM	4.22	2019-05-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Structure of Snf2-nucleosome complex at shl-2 in ADP BeFx state	Li, M., Xia, X., Tian, Y., Jia, Q., Liu, X., Lu, Y., Li, M., Li, X., Chen, Z.	10.1038/s41586-019-1029-2	30867599	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Transcription regulatory protein SNF2	Transcription-associated, Chromatin remodelers, SWI/SNF	P22082	P02281, P84233, P62799, Q6AZJ8	0.356
363	6ESF	EM	3.70	2017-12-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Nucleosome : Class 1	Bilokapic, S., Strauss, M., Halic, M.	10.1038/s41594-017-0005-5	29323273	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017				P02281, P84233, P62799, Q6AZJ8	0.378
364	6ESG	EM	5.40	2017-12-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	141	Nucleosome breathing : Class 2	Bilokapic, S., Strauss, M., Halic, M.	10.1038/s41594-017-0005-5	29323273	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017				P02281, P84233, P62799, Q6AZJ8	0.198
365	6ESH	EM	5.10	2017-12-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	137	Nucleosome breathing : Class 3	Bilokapic, S., Strauss, M., Halic, M.	10.1038/s41594-017-0005-5	29323273	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017				P02281, P84233, P62799, Q6AZJ8	0.209
366	6ESI	EM	6.30	2017-12-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	133	Nucleosome breathing : Class 4	Bilokapic, S., Strauss, M., Halic, M.	10.1038/s41594-017-0005-5	29323273	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017				P02281, P84233, P62799, Q6AZJ8	0.167
367	6FML	EM	4.34	2018-04-25	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	144	CryoEM Structure INO80core Nucleosome complex	Eustermann, S., Schall, K., Kostrewa, D., Lakomek, K., Strauss, M., Moldt, M., Hopfner, K.P.	10.1038/s41586-018-0029-y	29643509	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2018	RuvB-like helicase, Ino80, les2, Ies6, Actin related protein 5	Kinetochore, Nuclear division, Chromatin remodelers, INO80	G0RYI5, G0RYC2, G0RY01, G0S590, G0S589	P62805, P0C0S8, P62807, Q71DI3	0.33
368	6G0L	EM	10.00	2018-08-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	176	Structure of two molecules of the chromatin remodelling enzyme Chd1 bound to a nucleosome	Sundaramoorthy, R., Hughes, A.L., El-Mkami, H., Norman, D.G., Ferreira, H., Owen-Hughes, T.	10.7554/eLife.35720	30079888	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2018	Chromo domain-containing protein 1	Transcription-associated, CHD, Chromatin remodelers	P32657	Q92133, P06897, P62799, A0A1L8G0X3	0.095
369	6GEJ	EM	3.60	2018-10-17	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		601	154	Chromatin remodeller-nucleosome complex at 3.6 A resolution.	Willhoft, O., Ghoneim, M., Lin, C.L., Chua, E.Y.D., Wilkinson, M., Chaban, Y., Ayala, R., McCormack, E.A., Ocloo, L., Rueda, D.S., Wigley, D.B.	10.1126/science.aat7716	30309918	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)		2018	Helicase SWR1, Actin-like protein ARP6, Vacuolar protein sorting-associated protein 71, RuvB-like protein 1, RuvB-like protein 2	INO80, Euchromatin-associated, Transcription-associated, SWR1 (INO80), Chromatin remodelers	Q05471, Q12509, Q03433, Q03940, Q12464	P02309, P61830, P04911, P02293	0.372
370	6GEN	EM	3.60	2018-10-17	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		601	173	Chromatin remodeller-nucleosome complex at 4.5 A resolution.	Willhoft, O., Ghoneim, M., Lin, C.L., Chua, E.Y.D., Wilkinson, M., Chaban, Y., Ayala, R., McCormack, E.A., Ocloo, L., Rueda, D.S., Wigley, D.B.	10.1126/science.aat7716	30309918	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)		2018	Helicase SWR1, Actin-like protein ARP6, Vacuolar protein sorting-associated protein 71, RuvB-like protein 1, RuvB-like protein 2	INO80, Euchromatin-associated, Transcription-associated, SWR1 (INO80), Chromatin remodelers	Q05471, Q12509, Q03433, Q03940, Q12464	P02309, P61830, P04911, P02293	0.195
371	6IRO	EM	3.40	2019-04-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	the crosslinked complex of ISWI-nucleosome in the ADP-bound state	Yan, L., Wu, H., Li, X., Gao, N., Chen, Z.	10.1038/s41594-019-0199-9	30872815	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	ISWI chromatin-remodeling complex ATPase ISW1	Transcription-associated, Chromatin remodelers, ISWI	P38144	P02281, P84233, P06897, P62799	0.435
372	6JYL	EM	3.37	2019-05-29	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	The crosslinked complex of ISWI-nucleosome in the ADP.BeF-bound state	Yan, L., Wu, H., Li, X., Gao, N., Chen, Z.	10.1038/s41594-019-0199-9	30872815	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	ISWI chromatin-remodeling complex ATPase ISW1	Transcription-associated, Chromatin remodelers, ISWI	P38144	P02281, A0A310TTQ1, P62799, Q6AZJ8	0.452
373	6K1P	EM	3.87	2019-05-29	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	The complex of ISWI-nucleosome in the ADP.BeF-bound state	Yan, L., Wu, H., Li, X., Gao, N., Chen, Z.	10.1038/s41594-019-0199-9	30872815	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	ISWI chromatin-remodeling complex ATPase ISW1	Transcription-associated, Chromatin remodelers, ISWI	P38144	P02281, A0A310TTQ1, P62799, Q6AZJ8	0.42
374	6KIU	EM	3.20	2019-09-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Cryo-EM structure of human MLL1-ubNCP complex (3.2 angstrom)	Xue, H., Yao, T., Cao, M., Zhu, G., Li, Y., Yuan, G., Chen, Y., Lei, M., Huang, J.	10.1038/s41586-019-1528-1	31485071	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Histone-lysine N-methyltransferase 2A, Retinoblastoma-binding protein 5, Ubiquitin, WD repeat-containing protein 5, Set1/Ash2 histone methyltransferase complex subunit ASH2	COMPASS, Ubiquitin, Histone_methylation_H3K4_writer, Transcription-associated, Histone PTM writers	Q03164, Q15291, P62979, P61964, Q9UBL3	P02281, P84233, P06897, P62799	0.461
375	6KIV	EM	4.00	2019-09-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Cryo-EM structure of human MLL1-ubNCP complex (4.0 angstrom)	Xue, H., Yao, T., Cao, M., Zhu, G., Li, Y., Yuan, G., Chen, Y., Lei, M., Huang, J.	10.1038/s41586-019-1528-1	31485071	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Histone-lysine N-methyltransferase 2A, Retinoblastoma-binding protein 5, Ubiquitin, WD repeat-containing protein 5, Set1/Ash2 histone methyltransferase complex subunit ASH2	COMPASS, Ubiquitin, Histone_methylation_H3K4_writer, Transcription-associated, Histone PTM writers	Q03164, Q15291, P62979, P61964, Q9UBL3	P02281, P84233, P06897, P62799	0.343
376	6KIW	EM	4.00	2019-09-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	144	Cryo-EM structure of human MLL3-ubNCP complex (4.0 angstrom)	Xue, H., Yao, T., Cao, M., Zhu, G., Li, Y., Yuan, G., Chen, Y., Lei, M., Huang, J.	10.1038/s41586-019-1528-1	31485071	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Histone-lysine N-methyltransferase 2C, Retinoblastoma-binding protein 5, Ubiquitin, WD repeat-containing protein 5, Set1/Ash2 histone methyltransferase complex subunit ASH2	COMPASS, Ubiquitin, Histone_methylation_H3K4_writer, Transcription-associated, Histone PTM writers	Q8NEZ4, Q15291, P62979, P61964, Q9UBL3	P02281, P84233, P06897, P62799	0.33
377	6KIX	EM	4.10	2019-09-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Cryo-EM structure of human MLL1-NCP complex, binding mode1	Xue, H., Yao, T., Cao, M., Zhu, G., Li, Y., Yuan, G., Chen, Y., Lei, M., Huang, J.	10.1038/s41586-019-1528-1	31485071	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Histone-lysine N-methyltransferase 2A, Retinoblastoma-binding protein 5, WD repeat-containing protein 5, Set1/Ash2 histone methyltransferase complex subunit ASH2	Transcription-associated, COMPASS, Histone_methylation_H3K4_writer, Histone PTM writers	Q03164, Q15291, P61964, Q9UBL3	P02281, P84233, P06897, P62799	0.338
378	6KIZ	EM	4.50	2019-09-11	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Cryo-EM structure of human MLL1-NCP complex, binding mode2	Xue, H., Yao, T., Cao, M., Zhu, G., Li, Y., Yuan, G., Chen, Y., Lei, M., Huang, J.	10.1038/s41586-019-1528-1	31485071	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Histone-lysine N-methyltransferase 2A, Retinoblastoma-binding protein 5, WD repeat-containing protein 5, Set1/Ash2 histone methyltransferase complex subunit ASH2	Transcription-associated, COMPASS, Histone_methylation_H3K4_writer, Histone PTM writers	Q03164, Q15291, P61964, Q9UBL3	P02281, P84233, P06897, P62799	0.31
379	6NN6	EM	3.90	2019-02-13	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Structure of Dot1L-H2BK120ub nucleosome complex	Anderson, C.J., Baird, M.R., Hsu, A., Barbour, E.H., Koyama, Y., Borgnia, M.J., McGinty, R.K.	10.1016/j.celrep.2019.01.058	30759380	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Histone-lysine N-methyltransferase, H3 lysine-79 specific, Ubiquitin	Ubiquitin, Histone_ubiquitination_H2BK120_reader, Histone_methylation_H3K79_writer, Histone PTM writers	Q8TEK3, F5H388	P02281, P84233, P06897, P62799	0.371
380	6NOG	EM	3.90	2019-02-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Poised-state Dot1L bound to the H2B-Ubiquitinated nucleosome	Worden, E.J., Hoffmann, N.A., Hicks, C.W., Wolberger, C.	10.1016/j.cell.2019.02.002	30765112	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Histone-lysine N-methyltransferase, H3 lysine-79 specific, Ubiquitin	Ubiquitin, Histone_ubiquitination_H2BK120_reader, Histone_methylation_H3K79_writer, Histone PTM writers	Q8TEK3, J3QS39	P02281, P84233, P06897, P62799	0.356
381	6NZO	EM	3.80	2019-08-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Set2 bound to nucleosome	Bilokapic, S., Halic, M.	10.1038/s41467-019-11726-4	31439846	Xenopus laevis	Xenopus laevis	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Xenopus laevis		2019	Histone-lysine N-methyltransferase	Transcription-associated, Histone_methylation_H3K36_writer, Histone PTM writers	G0S676	P02281, P02302, P62799, P0CH09	0.364
382	6O96	EM	3.50	2019-04-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Dot1L bound to the H2BK120 Ubiquitinated nucleosome	Valencia-Sanchez, M.I., De Ioannes, P., Wang, M., Vasilyev, N., Chen, R., Nudler, E., Armache, J.-P., Armache, K.J.	10.1016/j.molcel.2019.03.029	30981630	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Histone-lysine N-methyltransferase, H3 lysine-79 specific, Polyubiquitin-B	Ubiquitin, Histone_ubiquitination_H2BK120_reader, Histone_methylation_H3K79_writer, Histone PTM writers	Q8TEK3, P0CG47	P02281, P84233, P06897, P62799	0.38
383	6OM3	X-ray	3.30	2019-07-10	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Crystal structure of the Orc1 BAH domain in complex with a nucleosome core particle	De Ioannes, P., Leon, V.A., Kuang, Z., Wang, M., Boeke, J.D., Hochwagen, A., Armache, K.J.	10.1038/s41467-019-10609-y	31263106	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Origin recognition complex subunit 1	Transcription-associated, ORC, DNA replication	P54784	P02281, P84233, P06897, P62799	-
384	6PA7	EM	2.94	2020-06-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	166	The cryo-EM structure of the human DNMT3A2-DNMT3B3 complex bound to nucleosome.	Xu, T.H., Liu, M., Zhou, X.E., Liang, G., Zhao, G., Xu, H.E., Melcher, K., Jones, P.A.	10.1038/s41586-020-2747-1	32968275	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	DNA (cytosine-5)-methyltransferase 3A, DNA (cytosine-5)-methyltransferase 3B	Transcription-associated, DNA modification	Q9Y6K1, Q9UBC3	P02281, P84233, P06897, P62799	0.403
385	6PX1	EM	3.30	2019-08-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Set2 bound to nucleosome	Bilokapic, S., Halic, M.	10.1038/s41467-019-11726-4	31439846	Xenopus laevis	Xenopus laevis	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Xenopus laevis		2019				P02281, P02302, P62799, P0CH09	0.49
386	6PX3	EM	4.10	2019-08-28	hexamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Set2 bound to nucleosome	Bilokapic, S., Halic, M.	10.1038/s41467-019-11726-4	31439846	Xenopus laevis	Xenopus laevis	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Xenopus laevis		2019	Ubiquitin-60S ribosomal protein L40,Histone H2A, Histone-lysine N-methyltransferase	Transcription-associated, Ubiquitin, Histone_methylation_H3K36_writer, Histone PTM writers	P0CH09, G0S676	P02281, P02302, P62799, P0CH09	0.261
387	6R1U	EM	4.36	2019-04-24	octamer	1	H3.3,canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Structure of LSD2/NPAC-linker/nucleosome core particle complex: Class 2	Marabelli, C., Marrocco, B., Pilotto, S., Chittori, S., Picaud, S., Marchese, S., Ciossani, G., Forneris, F., Filippakopoulos, P., Schoehn, G., Rhodes, D., Subramaniam, S., Mattevi, A.	10.1016/j.celrep.2019.03.061	30970244	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Lysine-specific histone demethylase 1B, Putative oxidoreductase GLYR1	Histone PTM erasers, Histone_demethylation_H3K4, Histone PTM readers, Transcription-associated, Histone_methylation_H3K36_reader	Q8NB78, Q49A26	P02281, P84233, P06897, P62799	0.198
388	6R25	EM	4.61	2019-04-24	octamer	1	H3.3,canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Structure of LSD2/NPAC-linker/nucleosome core particle complex: Class 3	Marabelli, C., Marrocco, B., Pilotto, S., Chittori, S., Picaud, S., Marchese, S., Ciossani, G., Forneris, F., Filippakopoulos, P., Schoehn, G., Rhodes, D., Subramaniam, S., Mattevi, A.	10.1016/j.celrep.2019.03.061	30970244	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Lysine-specific histone demethylase 1B, NPAC	Histone PTM erasers, Histone_demethylation_H3K4, Histone PTM readers, Transcription-associated, Histone_methylation_H3K36_reader	Q8NB78, Q49A26	P02281, P84233, P06897, P62799	0.186
389	6T9L	EM	3.60	2020-01-29	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	SAGA DUB module bound to a ubiqitinated nucleosome	Wang, H., Dienemann, C., Stutzer, A., Urlaub, H., Cheung, A.C.M., Cramer, P.	10.1038/s41586-020-1933-5	31969703	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Ubiquitin carboxyl-terminal hydrolase 8, Transcription and mRNA export factor SUS1, SAGA-associated factor 11, SAGA-associated factor 73, Polyubiquitin-C	Histone PTM erasers, Ubiquitin, SAGA, Transcription-associated, Histone_deubiquitination	P50102, Q6WNK7, Q03067, P53165, P0CG48	P02281, P84233, P06897, P62799	0.394
390	6TDA	EM	15.00	2020-03-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	160	Structure of SWI/SNF chromatin remodeler RSC bound to a nucleosome	Wagner, F.R., Dienemann, C., Wang, H., Stutzer, A., Tegunov, D., Urlaub, H., Cramer, P.	10.1038/s41586-020-2088-0	32188943	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Chromatin structure-remodeling complex subunit SFH1, Chromatin structure-remodeling complex protein RSC8, Chromatin structure-remodeling complex subunit RSC7, Chromatin structure-remodeling complex subunit RSC9, Chromatin structure-remodeling complex protein RSC6, Chromatin structure-remodeling complex protein RSC58, High temperature lethal protein 1, Chromatin structure-remodeling complex subunit RSC4, Nuclear protein STH1/NPS1, Actin-related protein 7, Actin-like protein ARP9, Regulator of Ty1 transposition protein 102	Transcription-associated, RSC (SWI/SNF), Chromatin remodelers	Q06168, P43609, P32832, Q03124, P25632, Q07979, Q9URQ5, Q02206, P32597, Q12406, Q05123, P53330	P02281, P84233, P06897, P62799	0.081
391	6UXW	EM	8.96	2020-03-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	155	SWI/SNF nucleosome complex with ADP-BeFx	Han, Y., Reyes, A.A., Malik, S., He, Y.	10.1038/s41586-020-2087-1	32188938	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Transcription regulatory protein SNF2, SWI/SNF chromatin-remodeling complex subunit SWI1, SWI/SNF chromatin-remodeling complex subunit SNF5, SWI/SNF complex subunit SWI3, Transcription regulatory protein SNF12, Transcription regulatory protein SNF6, Actin-related protein 7, Actin-like protein ARP9, Regulator of Ty1 transposition protein 102	Transcription-associated, RSC (SWI/SNF), Chromatin remodelers, SWI/SNF	P22082, P09547, P18480, P32591, P53628, P18888, Q12406, Q05123, P53330	P02281, P84233, P06897, P62799	0.122
392	6VZ4	EM	3.90	2020-12-02	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102 bound to the nucleosome in ADP Beryllium Fluoride state	Baker, R.W., Reimer, J.M., Carman, P.J., Turegun, B., Arakawa, T., Dominguez, R., Leschziner, A.E.	10.1038/s41594-020-00528-8	33288924	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Nuclear protein STH1/NPS1, Actin-related protein 7, Actin-like protein ARP9, Regulator of Ty1 transposition protein 102	Transcription-associated, RSC (SWI/SNF), Chromatin remodelers	P32597, Q12406, Q05123, P53330	P02281, Q92133, P06897, P62799	-
393	6WZ5	EM	2.20	2020-09-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	153	Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin	Bilokapic, S., Suskiewicz, M.J., Ahel, I., Halic, M.	10.1038/s41586-020-2725-7	32939087	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020				P02281, P84233, P06897, P62799	0.504
394	6WZ9	EM	2.80	2020-09-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	148	Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin	Bilokapic, S., Suskiewicz, M.J., Ahel, I., Halic, M.	10.1038/s41586-020-2725-7	32939087	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020				P02281, P84233, P06897, P62799	0.508
395	6X0N	EM	10.00	2020-09-16	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	157	Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin	Bilokapic, S., Suskiewicz, M.J., Ahel, I., Halic, M.	10.1038/s41586-020-2725-7	32939087	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Histone PARylation factor 1, Poly [ADP-ribose] polymerase 2	DNA repair, Histone PTM writers, Histone_PARylation_writer	Q9NWY4, Q9UGN5	P02281, P84233, P06897, P62799	0.113
396	7AT8	EM	4.40	2020-12-09	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	156	Histone H3 recognition by nucleosome-bound PRC2 subunit EZH2.	Finogenova, K., Bonnet, J., Poepsel, S., Schafer, I.B., Finkl, K., Schmid, K., Litz, C., Strauss, M., Benda, C., Muller, J.	10.7554/eLife.61964	33211010	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Isoform 2 of Histone-lysine N-methyltransferase EZH2,Isoform 2 of Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2,Isoform 2 of Histone-lysine N-methyltransferase EZH2,Isoform 2 of Histone-lysine N-methyltransferase EZH2, Polycomb protein SUZ12	Histone_methylation_H3K27_writer, Histone_methylation_H3K9_writer, Polycomb, Transcription-associated, Histone PTM writers	Q15910, Q15022	P02281, P84233, P06897, P62799	0.29
397	7BWD	EM	4.32	2021-04-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Structure of Dot1L-H2BK34ub Nucleosome Complex	Liu, L., Lou, Z.Y., Ai, H.S., Cao, L.		0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2021	Histone-lysine N-methyltransferase, H3 lysine-79 specific, Ubiquitin	Ubiquitin, Histone_ubiquitination_H2BK120_reader, Histone_methylation_H3K79_writer, Histone PTM writers	Q8TEK3, P62979	P62805, O60814, P04908, P68431	0.332
398	7E8I	EM	3.10	2021-06-30	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Structural insight into BRCA1-BARD1 complex recruitment to damaged chromatin	Dai, L., Dai, Y., Han, J., Huang, Y., Wang, L., Huang, J., Zhou, Z.	10.1016/j.molcel.2021.05.010	34102105	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	BRCA1-associated RING domain protein 1, Polyubiquitin-B	E3 ubiquitin-protein ligation, Histone_ubiquitination_H2AK125_writer, DNA repair, Histone_ubiquitination_H2AK127_writer, Histone_ubiquitination_H2AK129_writer, Ubiquitin, Transcription-associated, Histone PTM writers	Q99728, P0CG47	P02281, P84233, P06897, P62799	0.456
399	7EG6	EM	3.10	2022-01-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Snf5 Finger Helix bound to the nucleosome	He, Z.Y., Chen, K.J., Ye, Y.P., Chen, Z.C.	10.1038/s41421-021-00262-5	33907182	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	SWI/SNF chromatin-remodeling complex subunit SNF5	Transcription-associated, Chromatin remodelers, SWI/SNF	P18480	P02281, P84233, P06897, P62799	0.513
400	7EGP	EM	6.90	2022-01-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	166	The structure of SWI/SNF-nucleosome complex	He, Z.Y., Chen, K.J., Ye, Y.P., Chen, Z.C.	10.1038/s41421-021-00262-5	33907182	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	Transcription regulatory protein SNF2, SWI/SNF chromatin-remodeling complex subunit SWI1, SWI/SNF chromatin-remodeling complex subunit SNF5, SWI/SNF complex subunit SWI3, Transcription regulatory protein SNF12, Transcription regulatory protein SNF6, SWI/SNF global transcription activator complex subunit SWP82, Regulator of Ty1 transposition protein 102, Actin-related protein 7, Actin-like protein ARP9	Transcription-associated, RSC (SWI/SNF), Chromatin remodelers, SWI/SNF	P22082, P09547, P18480, P32591, P53628, P18888, P43554, P53330, Q12406, Q05123	P02281, P84233, P62799, Q6AZJ8	0.105
401	7ENN	EM	2.80	2021-07-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	The structure of ALC1 bound to the nucleosome	Wang, L., Chen, K., Chen, Z.	10.1038/s41467-021-24320-4	34210977	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	Chromodomain-helicase-DNA-binding protein 1-like	CHD, DNA repair, Chromatin remodelers	Q86WJ1	P02281, P84233, P06897, P62799	0.567
402	7MBM	EM	NaN	2021-12-29	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Cryo-EM structure of MLL1-NCP (H3K4M) complex, mode01	Ayoub, A., Park, S.H., Lee, Y.T., Cho, U.S., Dou, Y.	10.1021/acs.biochem.1c00603	34928138	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	Retinoblastoma-binding protein 5, WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A, Set1/Ash2 histone methyltransferase complex subunit ASH2	Transcription-associated, Histone_methylation_H3K4_writer, COMPASS, Histone PTM writers	Q15291, P61964, Q03164, Q9UBL3	P02281, P84233, P06897, P62799	0.198
403	7MBN	EM	NaN	2021-12-29	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of MLL1-NCP (H3K4M) complex, mode02	Ayoub, A., Park, S.H., Lee, Y.T., Cho, U.S., Dou, Y.	10.1021/acs.biochem.1c00603	34928138	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	Retinoblastoma-binding protein 5, WD repeat-containing protein 5, Histone-lysine N-methyltransferase 2A, Set1/Ash2 histone methyltransferase complex subunit ASH2	Transcription-associated, Histone_methylation_H3K4_writer, COMPASS, Histone PTM writers	Q15291, P61964, Q03164, Q9UBL3	P02281, P84233, P06897, P62799	0.217
404	7OH9	EM	3.00	2021-07-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Nucleosome with TBP and TFIIA bound at SHL -6	Wang, H., Xiong, L., Cramer, P.	10.1073/pnas.2108859118	34301908	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	TATA-binding protein, Transcription initiation factor IIA large subunit, Transcription initiation factor IIA subunit 2	Transcription-associated, Transcription factors	P13393, P32773, P32774	P02281, P84233, P06897, P62799	0.49
405	7OHA	EM	2.90	2021-07-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	122	nucleosome with TBP and TFIIA bound at SHL +2	Wang, H., Xiong, L., Cramer, P.	10.1073/pnas.2108859118	34301908	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	TATA-binding protein, Transcription initiation factor IIA large subunit, Transcription initiation factor IIA subunit 2	Transcription-associated, Transcription factors	P13393, P32773, P32774	P02281, P84233, P06897, P62799	0.516
406	7OHB	EM	3.40	2021-07-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	TBP-nucleosome complex	Wang, H., Xiong, L., Cramer, P.	10.1073/pnas.2108859118	34301908	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	TATA-binding protein	Transcription-associated, Transcription factors	P13393	P02281, P84233, P06897, P62799	0.435
407	7OHC	EM	2.50	2021-07-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Cryo-EM structure of nucleosome core particle composed of the Widom 601 DNA sequence	Wang, H., Xiong, L., Cramer, P.	10.1073/pnas.2108859118	34301908	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021				P02281, P84233, P06897, P62799	0.587
408	7SSA	EM	3.20	2023-04-05	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		601	137	Cryo-EM structure of pioneer factor Cbf1 bound to the nucleosome	Donovan, B.T., Chen, H., Eek, P., Meng, Z., Jipa, C., Tan, S., Bai, L., Poirier, M.G.	10.1016/j.molcel.2023.03.006	36996811	Xenopus laevis	Xenopus laevis	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)		2023	Centromere-binding protein 1	Transcription-associated	P17106	P04911, P84233, P62799, P02293	0.449
409	7TAN	EM	3.00	2022-05-04	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Structure of VRK1 C-terminal tail bound to nucleosome core particle	Budziszewski, G.R., Zhao, Y., Spangler, C.J., Kedziora, K.M., Williams, M.R., Azzam, D.N., Skrajna, A., Koyama, Y., Cesmat, A.P., Simmons, H.C., Arteaga, E.C., Strauss, J.D., Kireev, D., McGinty, R.K.	10.1093/nar/gkac198	35390161	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Serine/threonine-protein kinase VRK1	Histone_phosphorylation_H3T3_writer, Nuclear division, Histone PTM writers	Q99986	P62805, P0C0S8, P62807, Q71DI3	0.56
410	7W9V	EM	3.95	2022-07-13	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Cryo-EM structure of nucleosome in complex with p300 acetyltransferase catalytic core (complex I)	Hatazawa, S., Liu, J., Takizawa, Y., Zandian, M., Negishi, L., Kutateladze, T.G., Kurumizaka, H.	10.1016/j.isci.2022.104563	35754730	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Histone acetyltransferase p300	DNA repair, p300, Histone_acetylation_writer, Transcription-associated, Histone PTM writers	Q09472	P62805, P06899, P04908, P68431	0.307
411	7XPX	EM	3.20	2022-06-01	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601L	145	Cryo-EM structure of the histone methyltransferase SET8 bound to H4K20Ecx-nucleosome	Shi, L., Huang, L., Long, H., Song, A., Zhou, Z.	10.1096/fj.202101821R	35532550	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	N-lysine methyltransferase KMT5A	Histone_methylation_H4K20_writer, Heterochromatin-associated, Transcription-associated, Nuclear division, Histone PTM writers	Q9NQR1	P02281, P84233, P06897, P62799	0.475
412	7XYG	EM	5.40	2023-12-06	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of Fft3-nucleosome complex with Fft3 bound to SHL+3 position of the nucleosome	Nan, Z., Tao, J., Yangao, H.		0	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster		2023	ATP-dependent helicase fft3	Heterochromatin-associated, Chromatin remodeling	O42861	P02299, P02283, P84051, P84040	0.219
413	7Y8R	EM	4.40	2022-12-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	165	The nucleosome-bound human PBAF complex	Wang, L., Yu, J., Yu, Z., Wang, Q., Li, W., Ren, Y., Chen, Z., He, S., Xu, Y.	10.1038/s41467-022-34859-5	36496390	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Transcription activator BRG1, ACTB protein (Fragment), Actin-like protein 6A, AT-rich interactive domain-containing protein 2, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, SWI/SNF complex subunit SMARCC2, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, PHD finger protein 10, Bromodomain-containing protein 7, Protein polybromo-1	Transcription-associated, PBAF (SWI/SNF), Chromatin remodelers, SWI/SNF	P51532, P60709, O96019, Q68CP9, Q12824, Q8TAQ2, Q96GM5, Q969G3, Q8WUB8, Q9NPI1, Q86U86	P62805, P62807, P68431, Q93077	0.172
414	7YI1	EM	2.80	2023-06-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	151	Cryo-EM structure of Eaf3 CHD bound to H3K36me3 nucleosome	Guan, H., Wang, P., Zhang, P., Ruan, C., Ou, Y., Peng, B., Zheng, X., Lei, J., Li, B., Yan, C., Li, H.	10.1038/s41586-023-06349-1	37468628	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Chromatin modification-related protein EAF3	DNA repair, Histone_acetylation_writer, Transcription-associated, Histone PTM writers, NuA4	Q12432	P02281, P84233, P06897, P62799	0.572
415	8ATF	EM	3.45	2022-12-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	143	Nucleosome-bound Ino80 ATPase	Kunert, F., Metzner, F.J., Jung, J., Hopfler, M., Woike, S., Schall, K., Kostrewa, D., Moldt, M., Chen, J.X., Bantele, S., Pfander, B., Eustermann, S., Hopfner, K.P.	10.1126/sciadv.add3189	36490333	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Ino80 ATPase, PAPA-1 domain-containing protein	Chromatin remodelers, INO80	G0RY01	P62805, P0C0S8, P62807, Q71DI3	0.474
416	8AV6	EM	4.68	2022-12-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	152	CryoEM structure of INO80 core nucleosome complex in closed grappler conformation	Kunert, F., Metzner, F.J., Jung, J., Hopfler, M., Woike, S., Schall, K., Kostrewa, D., Moldt, M., Chen, J.X., Bantele, S., Pfander, B., Eustermann, S., Hopfner, K.P.	10.1126/sciadv.add3189	36490333	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	RuvB-like helicase, Ino80, PAPA-1 domain-containing protein, YL1_C domain-containing protein, DASH complex subunit DAD4	Kinetochore, Nuclear division, Chromatin remodelers, INO80	G0RYI5, G0RYC2, G0RY01, G0S590, G0S589	P62805, P0C0S8, P62807, Q71DI3	-
417	8CWW	EM	2.74	2023-06-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Structure of S. cerevisiae Hop1 CBR bound to a nucleosome	Milano, C.R., Ur, S.N., Gu, Y., Zhang, J., Allison, R., Brown, G., Neale, M.J., Tromer, E.C., Corbett, K.D., Hochwagen, A.	10.1038/s44318-024-00034-3	38332377	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Meiosis-specific protein HOP1	Nuclear division	P20050	P02281, P84233, P06897, P62799	0.574
418	8CZE	EM	2.58	2023-06-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Structure of a Xenopus Nucleosome with Widom 601 DNA	Milano, C.R., Ur, S.N., Gu, Y., Zhang, J., Allison, R., Brown, G., Neale, M.J., Tromer, E.C., Corbett, K.D., Hochwagen, A.	10.1038/s44318-024-00034-3	38332377	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023				P02281, P84233, P06897, P62799	0.598
419	8G86	EM	2.30	2023-03-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			145	Human Oct4 bound to nucleosome with human nMatn1 sequence (focused refinement of nucleosome)	Sinha, K.K., Bilokapic, S., Du, Y., Malik, D., Halic, M.	10.1038/s41586-023-06112-6	37225990	Xenopus laevis	Xenopus laevis laevis	Xenopus laevis	Xenopus laevis		2023				P02281, P84233, P62799, Q6AZJ8	0.606
420	8G88	EM	2.30	2023-03-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			168	Human Oct4 bound to nucleosome with human nMatn1 sequence	Sinha, K.K., Bilokapic, S., Du, Y., Malik, D., Halic, M.	10.1038/s41586-023-06112-6	37225990	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	POU domain, class 5, transcription factor 1	Transcription-associated, Transcription factors	Q01860	P02281, P84233, P62799, Q6AZJ8	0.199
421	8G8B	EM	4.30	2023-03-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			168	Nucleosome with human nMatn1 sequence in complex with Human Oct4	Sinha, K.K., Bilokapic, S., Du, Y., Malik, D., Halic, M.	10.1038/s41586-023-06112-6	37225990	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	POU domain, class 5, transcription factor 1	Transcription-associated, Transcription factors	Q01860	P02281, P84233, P62799, Q6AZJ8	0.233
422	8G8G	EM	3.20	2023-03-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B			174	Interaction of H3 tail in LIN28B nucleosome with Oct4	Sinha, K.K., Bilokapic, S., Du, Y., Malik, D., Halic, M.	10.1038/s41586-023-06112-6	37225990	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	POU domain, class 5, transcription factor 1	Transcription-associated, Transcription factors	Q01860	P02281, P84233, P62799, Q6AZJ8	0.218
423	8HAG	EM	3.20	2023-05-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	147	Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (3.2 angstrom resolution)	Kikuchi, M., Morita, S., Wakamori, M., Sato, S., Uchikubo-Kamo, T., Suzuki, T., Dohmae, N., Shirouzu, M., Umehara, T.	10.1038/s41467-023-39735-4	37460559	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Histone acetyltransferase p300	DNA repair, p300, Histone_acetylation_writer, Transcription-associated, Histone PTM writers	Q09472	P62805, P06899, P04908, P68431	0.29
424	8HAH	EM	3.90	2023-05-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	164	Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (3.9 angstrom resolution)	Kikuchi, M., Morita, S., Wakamori, M., Sato, S., Uchikubo-Kamo, T., Suzuki, T., Dohmae, N., Shirouzu, M., Umehara, T.	10.1038/s41467-023-39735-4	37460559	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Histone acetyltransferase p300	DNA repair, p300, Histone_acetylation_writer, Transcription-associated, Histone PTM writers	Q09472	P62805, P06899, P04908, P68431	0.159
425	8HAI	EM	4.70	2023-05-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	147	Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (4.7 angstrom resolution)	Kikuchi, M., Morita, S., Wakamori, M., Sato, S., Uchikubo-Kamo, T., Suzuki, T., Dohmae, N., Shirouzu, M., Umehara, T.	10.1038/s41467-023-39735-4	37460559	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Histone acetyltransferase p300	DNA repair, p300, Histone_acetylation_writer, Transcription-associated, Histone PTM writers	Q09472	P62805, P06899, P04908, P68431	0.212
426	8HAJ	EM	4.80	2023-05-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	164	Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (4.8 angstrom resolution)	Kikuchi, M., Morita, S., Wakamori, M., Sato, S., Uchikubo-Kamo, T., Suzuki, T., Dohmae, N., Shirouzu, M., Umehara, T.	10.1038/s41467-023-39735-4	37460559	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Histone acetyltransferase p300	DNA repair, p300, Histone_acetylation_writer, Transcription-associated, Histone PTM writers	Q09472	P62805, P06899, P04908, P68431	0.2
427	8HAK	EM	4.50	2023-05-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 4 (4.5 angstrom resolution)	Kikuchi, M., Morita, S., Wakamori, M., Sato, S., Uchikubo-Kamo, T., Suzuki, T., Dohmae, N., Shirouzu, M., Umehara, T.	10.1038/s41467-023-39735-4	37460559	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Histone acetyltransferase p300	DNA repair, p300, Histone_acetylation_writer, Transcription-associated, Histone PTM writers	Q09472	P62805, P06899, P04908, P68431	0.214
428	8HAL	EM	4.40	2023-05-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	151	Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 1	Kikuchi, M., Morita, S., Wakamori, M., Sato, S., Uchikubo-Kamo, T., Suzuki, T., Dohmae, N., Shirouzu, M., Umehara, T.	10.1038/s41467-023-39735-4	37460559	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	CREB-binding protein	Transcription-associated, Histone_acetylation_H3K18_writer, Histone PTM writers, Histone_acetylation_H3K27_writer	Q92793	P62805, P06899, P04908, P68431	0.195
429	8HAM	EM	4.50	2023-05-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	165	Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 2	Kikuchi, M., Morita, S., Wakamori, M., Sato, S., Uchikubo-Kamo, T., Suzuki, T., Dohmae, N., Shirouzu, M., Umehara, T.	10.1038/s41467-023-39735-4	37460559	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	CREB-binding protein	Transcription-associated, Histone_acetylation_H3K18_writer, Histone PTM writers, Histone_acetylation_H3K27_writer	Q92793	P62805, P06899, P04908, P68431	0.242
430	8HAN	EM	4.20	2023-05-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	147	Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 3	Kikuchi, M., Morita, S., Wakamori, M., Sato, S., Uchikubo-Kamo, T., Suzuki, T., Dohmae, N., Shirouzu, M., Umehara, T.	10.1038/s41467-023-39735-4	37460559	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	CREB-binding protein	Transcription-associated, Histone_acetylation_H3K18_writer, Histone PTM writers, Histone_acetylation_H3K27_writer	Q92793	P62805, P06899, P04908, P68431	0.209
431	8KD2	EM	3.02	2023-09-13	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	174	Rpd3S in complex with 187bp nucleosome	Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J.	10.1038/s41422-023-00869-1	37666978	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Histone deacetylase RPD3, Transcriptional regulatory protein SIN3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1	Histone PTM erasers, Histone_deacetylation, Rpd3, DNA repair, Telomere-associated, Histone_acetylation_writer, Transcription-associated, Histone PTM writers, NuA4	P32561, P22579, Q12432, Q04779	P02281, P84233, P06897, P62799	0.35
432	8OO7	EM	2.80	2023-07-26	hexamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	113	CryoEM Structure INO80core Hexasome complex composite model state1	Zhang, M., Jungblut, A., Kunert, F., Hauptmann, L., Hoffmann, T., Kolesnikova, O., Metzner, F., Moldt, M., Weis, F., DiMaio, F., Hopfner, K.P., Eustermann, S.	10.1126/science.adf6287	37384673	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	RuvB-like protein 1, RuvB-like protein 2, Chromatin-remodeling ATPase Ino80, Ino eighty subunit 2, Chromatin-remodeling complex subunit IES6, Actin-related protein 5	Kinetochore, Nuclear division, Chromatin remodelers, INO80	G0RYI5, G0RYC2, G0RY01, G0S590, G0S589	P62805, P62807, P68431, Q93077	0.556
433	8OOA	EM	3.18	2023-07-26	hexamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	102	CryoEM Structure INO80core Hexasome complex Hexasome refinement state1	Zhang, M., Jungblut, A., Kunert, F., Hauptmann, L., Hoffmann, T., Kolesnikova, O., Metzner, F., Moldt, M., Weis, F., DiMaio, F., Hopfner, K.P., Eustermann, S.	10.1126/science.adf6287	37384673	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023				P62805, P62807, P68431, Q93077	0.525
434	8OOP	EM	2.70	2023-07-26	hexamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	110	CryoEM Structure INO80core Hexasome complex composite model state2	Zhang, M., Jungblut, A., Kunert, F., Hauptmann, L., Hoffmann, T., Kolesnikova, O., Metzner, F., Moldt, M., Weis, F., DiMaio, F., Hopfner, K.P., Eustermann, S.	10.1126/science.adf6287	37384673	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	RuvB-like protein 1, RuvB-like protein 2, Chromatin-remodeling ATPase Ino80, Ino eighty subunit 2, Chromatin-remodeling complex subunit IES6, Actin-related protein 5	Kinetochore, Nuclear division, Chromatin remodelers, INO80	G0RYI5, G0RYC2, G0RY01, G0S590, G0S589	P62805, P62807, P68431, Q93077	0.554
435	8OOS	EM	3.29	2023-07-26	hexamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	110	CryoEM Structure INO80core Hexasome complex ATPase-hexasome refinement state 2	Zhang, M., Jungblut, A., Kunert, F., Hauptmann, L., Hoffmann, T., Kolesnikova, O., Metzner, F., Moldt, M., Weis, F., DiMaio, F., Hopfner, K.P., Eustermann, S.	10.1126/science.adf6287	37384673	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Chromatin-remodeling ATPase Ino80			P62805, P62807, P68431, Q93077	0.494
436	8PP6	EM	3.18	2024-04-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	156	human RYBP-PRC1 bound to H2AK118ub1 nucleosome	Ciapponi, M., Karlukova, E., Schkolziger, S., Benda, C., Muller, J.	10.1038/s41594-024-01258-x	38528151	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster		2024	RING1 and YY1-binding protein, Ubiquitin-40S ribosomal protein S27a (Fragment)		Q8N488, J3QTR3	P02283, A0A0B4KFZ9, P84051, A0A7L0PXJ3	0.465
437	8PP7	EM	2.91	2024-03-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	153	human RYBP-PRC1 bound to mononucleosome	Ciapponi, M., Karlukova, E., Schkolziger, S., Benda, C., Muller, J.	10.1038/s41594-024-01258-x	38528151	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster		2024	Polycomb complex protein BMI-1, E3 ubiquitin-protein ligase RING2	E3 ubiquitin-protein ligation, Polycomb, Histone_ubiquitination_H2AK119_writer, Transcription-associated, Histone PTM writers	P35226, Q99496	P02283, A0A0B4KFZ9, P84051, A0A7L0PXJ3	0.511
438	8SIY	EM	2.90	2023-08-02	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Origin Recognition Complex Associated (ORCA) protein bound to H4K20me3-nucleosome	Sahu, S., Ekundayo, B.E., Kumar, A., Bleichert, F.	10.15252/embj.2023114654	37551430	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Leucine-rich repeat and WD repeat-containing protein 1, Origin recognition complex subunit 2	Heterochromatin-associated, ORC, DNA replication	A0A140UHX1, Q75PQ8	P02281, P84233, P06897, P62799	0.497
439	8T3T	EM	3.21	2023-10-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Structure of Bre1-nucleosome complex - state3	Zhao, F., Hicks, C.W., Wolberger, C.	10.1038/s41594-023-01137-x	37872231	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	E3 ubiquitin-protein ligase BRE1	E3 ubiquitin-protein ligation, Telomere-associated, Histone_ubiquitination_H2BK123_writer, Transcription-associated, Histone PTM writers	Q07457	P02281, P84233, P06897, P62799	0.535
440	8T3W	EM	3.25	2023-10-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Structure of Bre1-nucleosome complex - state2	Zhao, F., Hicks, C.W., Wolberger, C.	10.1038/s41594-023-01137-x	37872231	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	E3 ubiquitin-protein ligase BRE1	E3 ubiquitin-protein ligation, Telomere-associated, Histone_ubiquitination_H2BK123_writer, Transcription-associated, Histone PTM writers	Q07457	P02281, P84233, P06897, P62799	0.52
441	8T3Y	EM	3.47	2023-10-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Structure of Bre1-nucleosome complex - state1	Zhao, F., Hicks, C.W., Wolberger, C.	10.1038/s41594-023-01137-x	37872231	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	E3 ubiquitin-protein ligase BRE1	E3 ubiquitin-protein ligation, Telomere-associated, Histone_ubiquitination_H2BK123_writer, Transcription-associated, Histone PTM writers	Q07457	P02281, P84233, P06897, P62799	0.503
442	8T9F	EM	2.60	2023-09-06	octamer	1	canonical_H3	canonical_H4	H2A.Z	canonical_H2B		601	122	Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1	Abini-Agbomson, S., Gretarsson, K., Shih, R.M., Hsieh, L., Lou, T., De Ioannes, P., Vasilyev, N., Lee, R., Wang, M., Simon, M.D., Armache, J.P., Nudler, E., Narlikar, G., Liu, S., Lu, C., Armache, K.J.	10.1016/j.molcel.2023.07.020	37595555	Xenopus laevis	Xenopus laevis	Homo sapiens	Xenopus laevis		2023	Histone-lysine N-methyltransferase KMT5B	Transcription-associated, Histone_methylation_H4K20_writer, Heterochromatin-associated, Histone PTM writers	Q4FZB7	P02281, P84233, P62799, P0C0S5	0.516
443	8T9H	EM	3.37	2023-09-13	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	99	Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1	Abini-Agbomson, S., Armache, K.-J.		0	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Histone-lysine N-methyltransferase KMT5B	Transcription-associated, Histone_methylation_H4K20_writer, Heterochromatin-associated, Histone PTM writers	Q4FZB7	P02281, P84233, P06897, P62799	0.393
444	8THU	EM	3.10	2023-09-06	octamer	1	canonical_H3	canonical_H4	H2A.Z	canonical_H2B		601	145	Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1	Abini-Agbomson, S., Gretarsson, K., Shih, R.M., Hsieh, L., Lou, T., De Ioannes, P., Vasilyev, N., Lee, R., Wang, M., Simon, M.D., Armache, J.P., Nudler, E., Narlikar, G., Liu, S., Lu, C., Armache, K.J.	10.1016/j.molcel.2023.07.020	37595555	Xenopus laevis	Xenopus laevis	Homo sapiens	Xenopus laevis		2023				P02281, P84233, P62799, P0C0S5	0.508
445	1F66	X-ray	2.60	2000-11-27	octamer	1	canonical_H3	canonical_H4	H2A.Z	canonical_H2B		alphasat_146	146	2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z	Suto, R.K., Clarkson, M.J., Tremethick, D.J., Luger, K.	10.1038/81971	11101893	Xenopus laevis	Mus musculus	Homo sapiens	Xenopus laevis		2000				P02281, P84233, P62806, P0C0S5	-
446	3KXB	X-ray	3.20	2010-06-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Structural characterization of H3K56Q nucleosomes and nucleosomal arrays	Watanabe, S., Resch, M., Lilyestrom, W., Clark, N., Hansen, J.C., Peterson, C., Luger, K.	10.1016/j.bbagrm.2010.01.009	20100606	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2010				P02281, P84233, P62799, Q6AZJ8	-
447	4JJN	X-ray	3.09	2013-05-15	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		601	146	Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome	Wang, F., Li, G., Altaf, M., Lu, C., Currie, M.A., Johnson, A., Moazed, D.	10.1073/pnas.1300126110	23650358	Saccharomyces cerevisiae	Saccharomyces cerevisiae	Saccharomyces cerevisiae	Saccharomyces cerevisiae		2013	Regulatory protein SIR3	Transcription-associated	P06701	P02309, P61830, P04912, P02294	-
448	5B0Y	X-ray	2.56	2016-01-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal structure of the nucleosome containing histone H3 with the crotonylated lysine 122	Suzuki, Y., Horikoshi, N., Kato, D., Kurumizaka, H.	10.1016/j.bbrc.2015.12.041	26694698	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2016				P62805, P06899, P04908, Q71DI3	-
449	5GXQ	X-ray	2.85	2017-04-19	octamer	1	H3.6	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The crystal structure of the nucleosome containing H3.6	Taguchi, H., Xie, Y., Horikoshi, N., Maehara, K., Harada, A., Nogami, J., Sato, K., Arimura, Y., Osakabe, A., Kujirai, T., Iwasaki, T., Semba, Y., Tachibana, T., Kimura, H., Ohkawa, Y., Kurumizaka, H.	10.1021/acs.biochem.6b01098	28374988	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2017				P62805, P06899, P04908, A0A1X8XL64	-
450	6ZHX	EM	2.50	2020-12-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Cryo-EM structure of the regulatory linker of ALC1 bound to the nucleosome's acidic patch: nucleosome class.	Lehmann, L.C., Bacic, L., Hewitt, G., Brackmann, K., Sabantsev, A., Gaullier, G., Pytharopoulou, S., Degliesposti, G., Okkenhaug, H., Tan, S., Costa, A., Skehel, J.M., Boulton, S.J., Deindl, S.	10.1016/j.celrep.2020.108529	33357431	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Chromodomain-helicase-DNA-binding protein 1-like	CHD, DNA repair, Chromatin remodelers	Q86WJ1	P02281, P84233, P06897, P62799	0.625
451	6ZHY	EM	3.00	2020-12-23	hexamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	110	Cryo-EM structure of the regulatory linker of ALC1 bound to the nucleosome's acidic patch: hexasome class.	Lehmann, L.C., Bacic, L., Hewitt, G., Brackmann, K., Sabantsev, A., Gaullier, G., Pytharopoulou, S., Degliesposti, G., Okkenhaug, H., Tan, S., Costa, A., Skehel, J.M., Boulton, S.J., Deindl, S.	10.1016/j.celrep.2020.108529	33357431	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Chromodomain-helicase-DNA-binding protein 1-like	CHD, DNA repair, Chromatin remodelers	Q86WJ1	P02281, P84233, P06897, P62799	0.516
452	7M1X	EM	3.70	2021-09-29	octamer	1	canonical_H3	canonical_H4	H2A.Z	canonical_H2B		601	136	Cryo-EM Structure of Nucleosome containing mouse histone variant H2A.Z	Lewis, T.S., Sokolova, V., Jung, H., Ng, H., Tan, D.	10.1093/nar/gkab907	34643712	Xenopus laevis	Xenopus laevis	Mus musculus	Xenopus laevis		2021				P02281, P02302, P62799, P0C0S6	0.391
453	7OTQ	EM	4.80	2021-09-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	149	Cryo-EM structure of ALC1/CHD1L bound to a PARylated nucleosome	Bacic, L., Gaullier, G., Sabantsev, A., Lehmann, L.C., Brackmann, K., Dimakou, D., Halic, M., Hewitt, G., Boulton, S., Deindl, S., Workman, J.L.	10.7554/eLife.71420	34486521	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	Chromodomain-helicase-DNA-binding protein 1-like	CHD, DNA repair, Chromatin remodelers	Q86WJ1	P02281, P84233, P06897, P62799	0.282
454	8B0A	EM	3.00	2023-09-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	149	Cryo-EM structure of ALC1 bound to an asymmetric, site-specifically PARylated nucleosome	Bacic, L., Gaullier, G., Mohapatra, J., Mao, G., Brackmann, K., Panfilov, M., Liszczak, G., Sabantsev, A., Deindl, S.	10.1038/s41467-024-45237-8	38307862	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Chromodomain-helicase-DNA-binding protein 1-like	CHD, DNA repair, Chromatin remodelers	Q86WJ1	P02281, P84233, P06897, P62799	0.483
455	8ETT	EM	6.68	2023-07-12	hexamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	110	Class1 of the INO80-Hexasome complex	Wu, H., Munoz, E.N., Hsieh, L.J., Chio, U.S., Gourdet, M.A., Narlikar, G.J., Cheng, Y.	10.1126/science.adf4197	37384669	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023				P02281, P84233, P06897, P62799	0.186
456	8ETV	EM	3.16	2023-07-12	hexamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	110	Class2 of the INO80-Hexasome complex	Wu, H., Munoz, E.N., Hsieh, L.J., Chio, U.S., Gourdet, M.A., Narlikar, G.J., Cheng, Y.	10.1126/science.adf4197	37384669	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023				P02281, P02302, P62799, Q6AZJ8	0.387
457	8EU2	EM	2.93	2023-07-12	hexamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	110	Class3 of the INO80-Hexasome complex	Wu, H., Munoz, E.N., Hsieh, L.J., Chio, U.S., Gourdet, M.A., Narlikar, G.J., Cheng, Y.	10.1126/science.adf4197	37384669	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023				P02281, A0A310TTQ1, P62799, Q6AZJ8	0.434
458	8EUE	EM	3.48	2023-07-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Class1 of the INO80-Nucleosome complex	Wu, H., Munoz, E.N., Hsieh, L.J., Chio, U.S., Gourdet, M.A., Narlikar, G.J., Cheng, Y.	10.1126/science.adf4197	37384669	Xenopus	Xenopus	Xenopus	Xenopus		2023				P02281, P84233, P06897, P62799	0.356
459	8EUJ	EM	3.36	2023-07-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Class2 of the INO80-Nucleosome complex	Wu, H., Munoz, E.N., Hsieh, L.J., Chio, U.S., Gourdet, M.A., Narlikar, G.J., Cheng, Y.	10.1126/science.adf4197	37384669	Xenopus	Xenopus	Xenopus	Xenopus		2023				P62798, A0A310TTQ1, Q6AZJ8, A0A1B8Y854	0.322
460	8G6G	EM	2.93	2024-02-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	157	H2BK120ub+H3K79me2-modified nucleosome ubiquitin position 5	Hicks, C.W., Rahman, S., Fields, J.K., Morgan, M.T., Wolberger, C.		0	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2024	Ubiquitin	Ubiquitin	P0CG47	P02281, A0A310TTQ1, P62799, Q6AZJ8	0.575
461	8G6H	EM	3.06	2024-02-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	157	H2BK120ub+H3K79me2-modified nucleosome ubiquitin position 6	Hicks, C.W., Rahman, S., Fields, J.K., Morgan, M.T., Wolberger, C.		0	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2024	Ubiquitin	Ubiquitin	P0CG47	P02281, A0A310TTQ1, P62799, Q6AZJ8	0.552
462	1ID3	X-ray	3.10	2001-09-28	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		alphasat_146	146	CRYSTAL STRUCTURE OF THE YEAST NUCLEOSOME CORE PARTICLE REVEALS FUNDAMENTAL DIFFERENCES IN INTER-NUCLEOSOME INTERACTIONS	White, C.L., Suto, R.K., Luger, K.	10.1093/emboj/20.18.5207	11566884	Saccharomyces cerevisiae	Saccharomyces cerevisiae	Saccharomyces cerevisiae	Saccharomyces cerevisiae		2001				P02309, P61830, P04911, P02294	-
463	5B40	X-ray	3.33	2016-06-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The nucleosome structure containing H2B-K120 and H4-K31 monoubiquitinations	Machida, S., Sekine, S., Nishiyama, Y., Horikoshi, N., Kurumizaka, H.		0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2016				P62805, P06899, P04908, Q71DI3	-
464	6T79	EM	3.20	2020-04-29	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		DNA-1	145	Structure of a human nucleosome at 3.2 A resolution	Dodonova, S.O., Zhu, F., Dienemann, C., Taipale, J., Cramer, P.	10.1038/s41586-020-2195-y	32350470	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, O60814, P04908, Q71DI3	0.47
465	6T7A	EM	3.70	2020-04-29	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		DNA-1	95	Structure of human Sox11 transcription factor in complex with a nucleosome	Dodonova, S.O., Zhu, F., Dienemann, C., Taipale, J., Cramer, P.	10.1038/s41586-020-2195-y	32350470	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Transcription factor SOX-11	Transcription-associated, Transcription factors	P35716	P62805, O60814, P04908, Q71DI3	0.37
466	6T7B	EM	5.10	2020-04-29	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		DNA-1	95	Structure of human Sox2 transcription factor in complex with a nucleosome	Dodonova, S.O., Zhu, F., Dienemann, C., Taipale, J., Cramer, P.	10.1038/s41586-020-2195-y	32350470	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Transcription factor SOX-2	Transcription-associated, Transcription factors	P48431	P62805, O60814, P04908, Q71DI3	0.217
467	6T7C	EM	4.00	2020-04-29	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		DNA-1	95	Structure of two copies of human Sox11 transcription factor in complex with a nucleosome	Dodonova, S.O., Zhu, F., Dienemann, C., Taipale, J., Cramer, P.	10.1038/s41586-020-2195-y	32350470	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Transcription factor SOX-11	Transcription-associated, Transcription factors	P35716	P62805, O60814, P04908, Q71DI3	0.355
468	6T7D	EM	4.40	2020-04-29	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		DNA-1	117	Structure of human Sox11 transcription factor in complex with a nucleosome	Dodonova, S.O., Zhu, F., Dienemann, C., Taipale, J., Cramer, P.	10.1038/s41586-020-2195-y	32350470	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Transcription factor SOX-11	Transcription-associated, Transcription factors	P35716	P62805, O60814, P04908, Q71DI3	0.323
469	6UGM	EM	3.70	2019-11-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Structural basis of COMPASS eCM recognition of an unmodified nucleosome	Hsu, P.L., Shi, H., Leonen, C., Kang, J., Chatterjee, C., Zheng, N.	10.1016/j.molcel.2019.10.013	31733991	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Swd3, Bre2, Histone-lysine N-methyltransferase, H3 lysine-4 specific, Swd1, Sdc1, H3 N-terminus, Spp1	COMPASS, Histone_methylation_H3K4_writer, Telomere-associated, Transcription-associated, Histone PTM writers	Q6CLY5, Q6CTQ1, Q6CIT4, Q6CXF3, Q6CPN6, Q6CRQ4	P02281, Q92133, P62799, Q6AZJ8	0.385
470	6UH5	EM	3.50	2019-11-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Structural basis of COMPASS eCM recognition of the H2Bub nucleosome	Hsu, P.L., Shi, H., Leonen, C., Kang, J., Chatterjee, C., Zheng, N.	10.1016/j.molcel.2019.10.013	31733991	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Swd3, Bre2, Histone-lysine N-methyltransferase, H3 lysine-4 specific, Swd1, Sdc1, Ubiquitin, Spp1	COMPASS, Ubiquitin, Histone_methylation_H3K4_writer, Telomere-associated, Transcription-associated, Histone PTM writers	Q6CLY5, Q6CTQ1, Q6CIT4, Q6CXF3, Q6CPN6, P0CG47, Q6CRQ4	P02281, Q6AZJ8, Q92133, P62799, P84233	0.372
471	6VYP	X-ray	4.99	2020-05-27	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	191	Crystal structure of the LSD1/CoREST histone demethylase bound to its nucleosome substrate	Kim, S.A., Zhu, J., Yennawar, N., Eek, P., Tan, S.	10.1016/j.molcel.2020.04.019	32396821	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Lysine-specific histone demethylase 1A, REST corepressor 1	Transcription-associated, Histone PTM erasers, Histone_demethylation_H3K9, Histone_demethylation_H3K4	O60341, Q9UKL0	P02281, P84233, P06897, P62799	-
472	7E8D	EM	2.80	2021-11-10	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	172	NSD2 E1099K mutant bound to nucleosome	Sato, K., Kumar, A., Hamada, K., Okada, C., Oguni, A., Machiyama, A., Sakuraba, S., Nishizawa, T., Nureki, O., Kono, H., Ogata, K., Sengoku, T.	10.1038/s41467-021-26913-5	34782608	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2021	Histone-lysine N-methyltransferase NSD2	Transcription-associated, Euchromatin-associated, Histone_methylation_H3K36_writer, Histone PTM writers	O96028	P62805, P0C0S8, P06899, P68431	0.556
473	7E9C	EM	3.50	2022-09-07	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		601	130	Cryo-EM structure of the 1:1 Orc1 BAH domain in complex with nucleosome	Jiang, H., Yu, C., Liu, C.P., Han, X., Yu, Z., Xu, R.M.		0	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)		2022	Origin recognition complex subunit 1	Transcription-associated, ORC, DNA replication	P54784	P02309, P61830, P04912, P02294	0.311
474	7E9F	EM	4.00	2022-09-07	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		601	123	Cryo-EM structure of the 2:1 Orc1 BAH domain in complex with nucleosome	Jiang, H., Yu, C., Liu, C.P., Han, X., Yu, Z., Xu, R.M.		0	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)		2022	Origin recognition complex subunit 1	Transcription-associated, ORC, DNA replication	P54784	P02309, P61830, P04912, P02294	0.319
475	7PEV	EM	6.00	2022-08-03	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	347	Nucleosome stack of the 4x177 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, O60814, P04908, Q71DI3	0.224
476	7PEW	EM	4.60	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	176	Nucleosome 1 of the 4x177 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, O60814, P04908, Q71DI3	0.29
477	7PEY	EM	4.50	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	171	Nucleosome 3 of the 4x177 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, O60814, P04908, Q71DI3	0.281
478	7PF4	EM	4.00	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	167	Nucleosome 3 of the 4x187 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, O60814, P04908, Q71DI3	0.274
479	7PFF	EM	4.30	2022-08-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	167	Nucleosome 3 of the 4x197 nucleosome array containing H1	Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.	10.1038/s41594-022-00768-w	35581345	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, O60814, P04908, Q71DI3	0.221
480	7UD5	EM	4.25	2022-09-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Complex between MLL1-WRAD and an H2B-ubiquitinated nucleosome	Rahman, S., Hoffmann, N.A., Worden, E.J., Smith, M.L., Namitz, K.E.W., Knutson, B.A., Cosgrove, M.S., Wolberger, C.	10.1073/pnas.2205691119	36095189	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	cDNA FLJ56846, highly similar to Zinc finger protein HRX, WD repeat-containing protein 5, Set1/Ash2 histone methyltransferase complex subunit ASH2, Retinoblastoma-binding protein 5, Polyubiquitin-B, Protein dpy-30 homolog	COMPASS, Ubiquitin, Histone_methylation_H3K4_writer, Transcription-associated, Histone PTM writers	B4DIJ7, P61964, Q9UBL3, Q15291, P0CG47, Q9C005	P02281, P84233, P06897, P62799	0.263
481	8DU4	EM	3.55	2022-09-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Complex between RbBP5-WDR5 and an H2B-ubiquitinated nucleosome	Rahman, S., Hoffmann, N.A., Worden, E.J., Smith, M.L., Namitz, K.E.W., Knutson, B.A., Cosgrove, M.S., Wolberger, C.	10.1073/pnas.2205691119	36095189	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	WD repeat-containing protein 5, Retinoblastoma-binding protein 5, Polyubiquitin-B	COMPASS, Ubiquitin, Histone_methylation_H3K4_writer, Transcription-associated, Histone PTM writers	P61964, Q15291, P0CG47	P02281, P02302, P06897, P62799	0.237
482	8UX1	EM	2.50	2023-11-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of Ran bound to RCC1 and the nucleosome core particle	Huang, S.K., Rubinstein, J.L., Kay, L.E.		0	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster		2023	GTP-binding nuclear protein Ran, Regulator of chromosome condensation		P62826, P18754	P02299, P02283, P84051, P84040	0.609
483	1M18	X-ray	2.45	2003-02-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA	Suto, R.K., Edayathumangalam, R.S., White, C.L., Melander, C., Gottesfeld, J.M., Dervan, P.B., Luger, K.	10.1016/S0022-2836(02)01407-9	12559907	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2003				P02281, P02302, P06897, P62799	-
484	1M19	X-ray	2.30	2003-02-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA	Suto, R.K., Edayathumangalam, R.S., White, C.L., Melander, C., Gottesfeld, J.M., Dervan, P.B., Luger, K.	10.1016/S0022-2836(02)01407-9	12559907	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2003				P02281, P02302, P06897, P62799	-
485	1M1A	X-ray	2.65	2003-02-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA	Suto, R.K., Edayathumangalam, R.S., White, C.L., Melander, C., Gottesfeld, J.M., Dervan, P.B., Luger, K.	10.1016/S0022-2836(02)01407-9	12559907	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2003				P02281, P02302, P06897, P62799	-
486	1ZLA	X-ray	2.90	2006-02-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	X-ray Structure of a Kaposi's sarcoma herpesvirus LANA peptide bound to the nucleosomal core	Barbera, A.J., Chodaparambil, J.V., Kelley-Clarke, B., Joukov, V., Walter, J.C., Luger, K., Kaye, K.M.	10.1126/science.1120541	16469929	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2006	latent nuclear antigen	Viral	Q9DUM3	P02281, P84233, P06897, P62799	-
487	3A6N	X-ray	2.70	2010-05-26	octamer	1	TS_H3.4	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	The nucleosome containing a testis-specific histone variant, human H3T	Tachiwana, H., Kagawa, W., Osakabe, A., Kawaguchi, K., Shiga, T., Hayashi-Takanaka, Y., Kimura, H., Kurumizaka, H.	10.1073/pnas.1003064107	20498094	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2010				P62805, P06899, P04908, Q16695	-
488	3C1C	X-ray	3.15	2008-10-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin structure	Lu, X., Simon, M.D., Chodaparambil, J.V., Hansen, J.C., Shokat, K.M., Luger, K.	10.1038/nsmb.1489	18794842	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus (Silurana) tropicalis		2008				Q28D68, P84233, P06897, P62799	-
489	5B1L	X-ray	2.35	2017-02-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	The mouse nucleosome structure containing H3t	Ueda, J., Harada, A., Urahama, T., Machida, S., Maehara, K., Hada, M., Makino, Y., Nogami, J., Horikoshi, N., Osakabe, A., Taguchi, H., Tanaka, H., Tachiwana, H., Yao, T., Yamada, M., Iwamoto, T., Isotani, A., Ikawa, M., Tachibana, T., Okada, Y., Kimura, H., Ohkawa, Y., Kurumizaka, H., Yamagata, K.	10.1016/j.celrep.2016.12.065	28099840	Mus musculus	Mus musculus	Mus musculus	Mus musculus		2017				Q9D2U9, C0HKE1, P62806, P68433	-
490	5F99	X-ray	2.63	2016-02-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		MMTV	147	X-ray Structure of the MMTV-A Nucleosome Core Particle	Frouws, T.D., Duda, S.C., Richmond, T.J.	10.1073/pnas.1524607113	26787910	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2016				P02281, P84233, P06897, P62799	-
491	5OMX	X-ray	2.32	2017-11-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	X-ray Structure of the H2A-N38C Nucleosome Core Particle	Frouws, T.D., Barth, P.D., Richmond, T.J.	10.1016/j.jmb.2017.10.029	29113904	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017				P02281, P84233, P06897, P62799	-
492	6S01	EM	3.20	2019-12-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	150	Structure of LEDGF PWWP domain bound H3K36 methylated nucleosome	Wang, H., Farnung, L., Dienemann, C., Cramer, P.	10.1038/s41594-019-0345-4	31819277	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	PC4 and SFRS1-interacting protein	Transcription-associated, Transcription factors, Histone_methylation_H3K36_reader, Histone PTM readers	O75475	P02281, P84233, P06897, P62799	0.529
493	7SWY	EM	2.60	2022-03-02	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	143	2.6 A structure of a 40-601[TA-rich+1]-40 nucleosome	Nodelman, I.M., Das, S., Faustino, A.M., Fried, S.D., Bowman, G.D., Armache, J.P.	10.1038/s41594-021-00719-x	35173352	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022				P02281, P84233, P06897, P62799	-
494	7TN2	EM	2.30	2022-03-02	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	160	Composite model of a Chd1-nucleosome complex in the nucleotide-free state derived from 2.3A and 2.7A Cryo-EM maps	Nodelman, I.M., Das, S., Faustino, A.M., Fried, S.D., Bowman, G.D., Armache, J.P.	10.1038/s41594-021-00719-x	35173352	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	Chromo domain-containing protein 1	Transcription-associated, CHD, Chromatin remodelers	P32657	P02281, P84233, P06897, P62799	-
495	7UX9	EM	3.20	2023-08-09	octamer	1	canonical_H3	canonical_H4	H2A.W	canonical_H2B		601	141	Arabidopsis DDM1 bound to nucleosome (H2A.W, H2B, H3.3, H4, with 147 bp DNA)	Lee, S.C., Adams, D.W., Ipsaro, J.J., Cahn, J., Lynn, J., Kim, H.S., Berube, B., Major, V., Calarco, J.P., LeBlanc, C., Bhattacharjee, S., Ramu, U., Grimanelli, D., Jacob, Y., Voigt, P., Joshua-Tor, L., Martienssen, R.A.	10.1016/j.cell.2023.08.001	37643610	Arabidopsis thaliana	Xenopus laevis	Arabidopsis thaliana	Arabidopsis thaliana		2023	ATP-dependent DNA helicase DDM1	Heterochromatin-associated, Chromatin remodeling	Q9XFH4	P59169, Q9FJE8, O23629, P62799	0.445
496	7ZS9	EM	3.10	2022-11-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	209	Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A)	Wang, H., Schilbach, S., Ninov, M., Urlaub, H., Cramer, P.	10.1038/s41594-022-00865-w	36411341	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	General transcription and DNA repair factor IIH helicase subunit XPD, General transcription and DNA repair factor IIH subunit TFB1, General transcription and DNA repair factor IIH subunit TFB2, RNA polymerase II transcription factor B subunit 3, General transcription and DNA repair factor IIH subunit TFB4, General transcription and DNA repair factor IIH subunit TFB5, General transcription and DNA repair factor IIH subunit SSL1, General transcription and DNA repair factor IIH helicase subunit XPB, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, Transcription initiation factor IIB, TATA-box-binding protein, Transcription initiation factor IIF subunit alpha, Transcription initiation factor IIF subunit beta, Transcription initiation factor IIA large subunit, Transcription initiation factor IIA subunit 2, Transcription initiation factor IIE subunit alpha, Transcription initiation factor IIE subunit beta	Transcription-associated, Transcription factors, DNA repair, RNA polymerases	P06839, P32776, Q02939, Q03290, Q12004, Q3E7C1, Q04673, Q00578, P04050, P08518, P16370, P20433, P20434, P20435, P34087, P20436, P27999, P22139, P38902, P40422, P29055, P13393, P41895, P41896, P32773, P32774, P36100, P36145	P02281, P84233, P06897, P62799	0.34
497	7ZSA	EM	4.00	2022-11-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	209	Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (complex B)	Wang, H., Schilbach, S., Ninov, M., Urlaub, H., Cramer, P.	10.1038/s41594-022-00865-w	36411341	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	General transcription and DNA repair factor IIH helicase subunit XPD, General transcription and DNA repair factor IIH subunit TFB1, General transcription and DNA repair factor IIH subunit TFB2, RNA polymerase II transcription factor B subunit 3, General transcription and DNA repair factor IIH subunit TFB4, General transcription and DNA repair factor IIH subunit TFB5, General transcription and DNA repair factor IIH subunit SSL1, General transcription and DNA repair factor IIH helicase subunit XPB, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, Transcription initiation factor IIB, TATA-box-binding protein, Transcription initiation factor IIF subunit alpha, Transcription initiation factor IIF subunit beta, Transcription initiation factor IIA large subunit, Transcription initiation factor IIA subunit 2, Transcription initiation factor IIE subunit alpha, Transcription initiation factor IIE subunit beta	Transcription-associated, Transcription factors, DNA repair, RNA polymerases	P06839, P32776, Q02939, Q03290, Q12004, Q3E7C1, Q04673, Q00578, P04050, P08518, P16370, P20433, P20434, P20435, P34087, P20436, P27999, P22139, P38902, P40422, P29055, P13393, P41895, P41896, P32773, P32774, P36100, P36145	P02281, P84233, P06897, P62799	0.342
498	7ZSB	EM	6.60	2022-11-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	219	Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, complex C	Wang, H., Schilbach, S., Ninov, M., Urlaub, H., Cramer, P.	10.1038/s41594-022-00865-w	36411341	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2022	General transcription and DNA repair factor IIH helicase subunit XPD, General transcription and DNA repair factor IIH subunit TFB1, General transcription and DNA repair factor IIH subunit TFB2, RNA polymerase II transcription factor B subunit 3, General transcription and DNA repair factor IIH subunit TFB4, General transcription and DNA repair factor IIH subunit TFB5, General transcription and DNA repair factor IIH subunit SSL1, General transcription and DNA repair factor IIH helicase subunit XPB, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, Transcription initiation factor IIB, TATA-box-binding protein, Transcription initiation factor IIF subunit alpha, Transcription initiation factor IIF subunit beta, Transcription initiation factor IIA large subunit, Transcription initiation factor IIA subunit 2, Transcription initiation factor IIE subunit alpha, Transcription initiation factor IIE subunit beta	Transcription-associated, Transcription factors, DNA repair, RNA polymerases	P06839, P32776, Q02939, Q03290, Q12004, Q3E7C1, Q04673, Q00578, P04050, P08518, P16370, P20433, P20434, P20435, P34087, P20436, P27999, P22139, P38902, P40422, P29055, P13393, P41895, P41896, P32773, P32774, P36100, P36145	P02281, P84233, P06897, P62799	0.277
499	8CBN	EM	3.34	2023-12-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	150	structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome	Koutna, E., Lux, V., Kouba, T., Skerlova, J., Novacek, J., Srb, P., Hexnerova, R., Svachova, H., Kukacka, Z., Novak, P., Fabry, M., Poepsel, S., Veverka, V.	10.1093/nar/gkad674	37615563	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	PC4 and SFRS1-interacting protein	Transcription-associated, Transcription factors, Histone_methylation_H3K36_reader, Histone PTM readers	O75475	P02281, P84233, P06897, P62799	0.392
500	8CBQ	EM	4.00	2023-09-06	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	150	structure of LEDGF/p75 PWWP domain bound to the H3K36 trimethylated dinucleosome	Koutna, E., Lux, V., Kouba, T., Skerlova, J., Novacek, J., Srb, P., Hexnerova, R., Svachova, H., Kukacka, Z., Novak, P., Fabry, M., Poepsel, S., Veverka, V.	10.1093/nar/gkad674	37615563	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	PC4 and SFRS1-interacting protein	Transcription-associated, Transcription factors, Histone_methylation_H3K36_reader, Histone PTM readers	O75475	P02281, P84233, P06897, P62799	0.304
501	8CEO	EM	3.60	2023-03-08	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	209	Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleosome	Schilbach, S., Wang, H., Dienemann, C., Cramer, P.	10.1073/pnas.2220542120	37014863	Xenopus laevis	Xenopus laevis	Xenopus laevis	Saccharomyces cerevisiae		2023	General transcription and DNA repair factor IIH helicase subunit XPD, TFB1 isoform 1, RNA polymerase II transcription factor B subunit 2, RNA polymerase II transcription factor B subunit 3, General transcription and DNA repair factor IIH subunit TFB4, General transcription and DNA repair factor IIH subunit TFB5, General transcription and DNA repair factor IIH, General transcription and DNA repair factor IIH helicase subunit XPB, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB4, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase II subunit RPB7, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4, Transcription initiation factor IIB, TATA-binding protein, Transcription initiation factor IIF subunit alpha, Transcription initiation factor IIF subunit beta, TOA1 isoform 1, Transcription initiation factor IIA subunit 2, Transcription initiation factor IIE subunit alpha, Transcription initiation factor IIE subunit beta, Mediator of RNA polymerase II transcription subunit 6, Mediator of RNA polymerase II transcription subunit 8, Mediator of RNA polymerase II transcription subunit 11, Mediator of RNA polymerase II transcription subunit 17, Mediator of RNA polymerase II transcription subunit 18, Mediator of RNA polymerase II transcription subunit 20, Mediator of RNA polymerase II transcription subunit 22, Mediator of RNA polymerase II transcription subunit 4, Mediator of RNA polymerase II transcription subunit 7, Mediator of RNA polymerase II transcription subunit 9, Mediator of RNA polymerase II transcription subunit 10, Mediator of RNA polymerase II transcription subunit 14, Mediator of RNA polymerase II transcription subunit 19, Mediator of RNA polymerase II transcription subunit 21, Mediator of RNA polymerase II transcription subunit 31, Mediator of RNA polymerase II transcription subunit 1	RNA polymerases, DNA repair, Mediator, Transcription factors, Transcription-associated	P06839, P32776, Q02939, Q03290, Q12004, Q3E7C1, Q04673, Q00578, P04050, P08518, P16370, P20433, P20434, P20435, P34087, P20436, P27999, P22139, P38902, P40422, P29055, P13393, P41895, P41896, P32773, P32774, P36100, P36145, P38782, P38304, Q99278, P32569, P32585, P34162, P32570, Q12343, Q08278, P33308, Q06213, P19263, P25046, P47822, P38633, Q12321	P02281, P84233, P06897, P62799	0.222
502	8F86	EM	3.10	2023-04-05	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	148	SIRT6 bound to an H3K9Ac nucleosome	Wang, Z.A., Markert, J.W., Whedon, S.D., Yapa Abeywardana, M., Lee, K., Jiang, H., Suarez, C., Lin, H., Farnung, L., Cole, P.A.	10.1021/jacs.2c13512	36930461	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	NAD-dependent protein deacylase sirtuin-6	Histone PTM erasers, Histone_deacetylation, Histone_deacetylation_H3K9, DNA repair, Transcription-associated	Q8N6T7	P02281, P84233, P06897, P62799	0.434
503	8G57	EM	3.07	2023-04-26	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	150	Structure of nucleosome-bound Sirtuin 6 deacetylase	Chio, U.S., Rechiche, O., Bryll, A.R., Zhu, J., Leith, E.M., Feldman, J.L., Peterson, C.L., Tan, S., Armache, J.P.	10.1126/sciadv.adf7586	37058572	Xenopus laevis	Xenopus laevis	Homo sapiens	Homo sapiens		2023	NAD-dependent protein deacylase sirtuin-6	Histone PTM erasers, Histone_deacetylation, Histone_deacetylation_H3K9, DNA repair, Transcription-associated	Q8N6T7	P06899, P84233, P04908, P62799	0.493
504	8HXY	EM	3.10	2023-09-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	170	Cryo-EM structure of the histone deacetylase complex Rpd3S in complex with nucleosome	Li, W., Cui, H., Lu, Z., Wang, H.	10.1038/s41594-023-01121-5	37798513	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1	Histone PTM erasers, Histone_deacetylation, Rpd3, DNA repair, Telomere-associated, Histone_acetylation_writer, Transcription-associated, Histone PTM writers, NuA4	P22579, P32561, Q12432, Q04779	P02281, P84233, P06897, P62799	0.44
505	8HXZ	EM	3.40	2023-09-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	164	Cryo-EM structure of Eaf3 CHD in complex with nucleosome	Li, W., Cui, H., Lu, Z., Wang, H.	10.1038/s41594-023-01121-5	37798513	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Chromatin modification-related protein EAF3	DNA repair, Histone_acetylation_writer, Transcription-associated, Histone PTM writers, NuA4	Q12432	P02281, P84233, P06897, P62799	0.326
506	8HY0	EM	3.10	2023-09-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	170	Composite cryo-EM structure of the histone deacetylase complex Rpd3S in complex with nucleosome	Li, W., Cui, H., Lu, Z., Wang, H.	10.1038/s41594-023-01121-5	37798513	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, Chromatin modification-related protein EAF3, RCO1 isoform 1	Histone PTM erasers, Histone_deacetylation, Rpd3, DNA repair, Telomere-associated, Histone_acetylation_writer, Transcription-associated, Histone PTM writers, NuA4	P22579, P32561, Q12432, Q04779	P02281, P84233, P06897, P62799	0.463
507	8IHM	EM	3.58	2024-03-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	158	Eaf3 CHD domain bound to the nucleosome	Zhang, Y., Xu, M., Wang, P., Zhou, J., Wang, G., Han, S., Cai, G., Wang, X.	10.1038/s41422-023-00884-2	37845487	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2024	Rco1-ABR, Chromatin modification-related protein EAF3		A0A8H4F719	A0A310TTQ1, A0A8J0U496, Q6AZJ8, A0A8J1LTD2	0.434
508	8IHT	EM	3.72	2024-03-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	158	Rpd3S bound to the nucleosome	Zhang, Y., Xu, M., Wang, P., Zhou, J., Wang, G., Han, S., Cai, G., Wang, X.	10.1038/s41422-023-00884-2	37845487	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2024	Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, RCO1 isoform 1, Chromatin modification-related protein EAF3	Histone PTM erasers, Histone_deacetylation, Rpd3, DNA repair, Telomere-associated, Transcription-associated	P22579, P32561, A0A8H4BXB0, A0A8H4F719	A0A310TTQ1, A0A8J0U496, Q6AZJ8, A0A8J1LTD2	0.345
509	8JHO	EM	7.60	2023-09-27	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	340	Cryo-EM structure of the histone deacetylase complex Rpd3S in complex with di-nucleosome	Li, W., Cui, H., Lu, Z., Wang, H.	10.1038/s41594-023-01121-5	37798513	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, Chromatin modification-related protein EAF3, RCO1 isoform 1	Histone PTM erasers, Histone_deacetylation, Rpd3, DNA repair, Telomere-associated, Histone_acetylation_writer, Transcription-associated, Histone PTM writers, NuA4	P22579, P32561, Q12432, Q04779	P02281, P84233, P06897, P62799	0.067
510	8KD4	EM	2.93	2023-09-13	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	164	Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class1	Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J.	10.1038/s41422-023-00869-1	37666978	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Histone deacetylase RPD3, Transcriptional regulatory protein SIN3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1	Histone PTM erasers, Histone_deacetylation, Rpd3, DNA repair, Telomere-associated, Histone_acetylation_writer, Transcription-associated, Histone PTM writers, NuA4	P32561, P22579, Q12432, Q04779	P02281, P84233, P06897, P62799	0.373
511	8KD5	EM	2.90	2023-09-13	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	160	Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class2	Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J.	10.1038/s41422-023-00869-1	37666978	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Histone deacetylase RPD3, Transcriptional regulatory protein SIN3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1	Histone PTM erasers, Histone_deacetylation, Rpd3, DNA repair, Telomere-associated, Histone_acetylation_writer, Transcription-associated, Histone PTM writers, NuA4	P32561, P22579, Q12432, Q04779	P02281, P84233, P06897, P62799	0.378
512	8KD6	EM	3.07	2023-09-13	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	164	Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class3	Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J.	10.1038/s41422-023-00869-1	37666978	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Histone deacetylase RPD3, Transcriptional regulatory protein SIN3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1	Histone PTM erasers, Histone_deacetylation, Rpd3, DNA repair, Telomere-associated, Histone_acetylation_writer, Transcription-associated, Histone PTM writers, NuA4	P32561, P22579, Q12432, Q04779	P02281, P84233, P06897, P62799	0.311
513	8KD7	EM	3.09	2023-09-13	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	152	Rpd3S in complex with nucleosome with H3K36MLA modification and 167bp DNA	Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J.	10.1038/s41422-023-00869-1	37666978	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	Histone deacetylase RPD3, Transcriptional regulatory protein SIN3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1	Histone PTM erasers, Histone_deacetylation, Rpd3, DNA repair, Telomere-associated, Histone_acetylation_writer, Transcription-associated, Histone PTM writers, NuA4	P32561, P22579, Q12432, Q04779	P02281, P84233, P06897, P62799	0.324
514	8PC5	EM	3.02	2023-08-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex	Koutna, E., Lux, V., Kouba, T., Skerlova, J., Novacek, J., Srb, P., Hexnerova, R., Svachova, H., Kukacka, Z., Novak, P., Fabry, M., Poepsel, S., Veverka, V.	10.1093/nar/gkad674	37615563	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	PC4 and SFRS1-interacting protein	Transcription-associated, Transcription factors, Histone_methylation_H3K36_reader, Histone PTM readers	O75475	P02281, P84233, P06897, P62799	0.521
515	8PC6	EM	3.04	2023-08-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex - pose 2	Koutna, E., Lux, V., Kouba, T., Skerlova, J., Novacek, J., Srb, P., Hexnerova, R., Svachova, H., Kukacka, Z., Novak, P., Fabry, M., Poepsel, S., Veverka, V.	10.1093/nar/gkad674	37615563	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	PC4 and SFRS1-interacting protein	Transcription-associated, Transcription factors, Histone_methylation_H3K36_reader, Histone PTM readers	O75475	P02281, P84233, P06897, P62799	0.484
516	8PEO	EM	2.69	2023-08-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	H3K36me2 nucleosome-LEDGF/p75 PWWP domain complex	Koutna, E., Lux, V., Kouba, T., Skerlova, J., Novacek, J., Srb, P., Hexnerova, R., Svachova, H., Kukacka, Z., Novak, P., Fabry, M., Poepsel, S., Veverka, V.	10.1093/nar/gkad674	37615563	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	PC4 and SFRS1-interacting protein	Transcription-associated, Transcription factors, Histone_methylation_H3K36_reader, Histone PTM readers	O75475	P02281, P84233, P06897, P62799	0.548
517	8PEP	EM	3.33	2023-08-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	H3K36me2 nucleosome-LEDGF/p75 PWWP domain complex - pose 2	Koutna, E., Lux, V., Kouba, T., Skerlova, J., Novacek, J., Srb, P., Hexnerova, R., Svachova, H., Kukacka, Z., Novak, P., Fabry, M., Poepsel, S., Veverka, V.	10.1093/nar/gkad674	37615563	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2023	PC4 and SFRS1-interacting protein	Transcription-associated, Transcription factors, Histone_methylation_H3K36_reader, Histone PTM readers	O75475	P02281, P84233, P06897, P62799	0.399
518	8V4Y	EM	2.80	2024-03-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 1)	Chio, U.S., Palovcak, E., Smith, A.A.A., Autzen, H., Munoz, E.N., Yu, Z., Wang, F., Agard, D.A., Armache, J.P., Narlikar, G.J., Cheng, Y.	10.1038/s41467-024-46178-y	38472177	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2024	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	Transcription-associated, Heterochromatin-associated, Chromatin remodelers, ISWI	O60264	P02281, P84233, P06897, P62799	0.53
519	8V6V	EM	2.80	2024-03-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of doubly-bound SNF2h-nucleosome complex	Chio, U.S., Palovcak, E., Smith, A.A.A., Autzen, H., Munoz, E.N., Yu, Z., Wang, F., Agard, D.A., Armache, J.P., Narlikar, G.J., Cheng, Y.	10.1038/s41467-024-46178-y	38472177	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2024	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	Transcription-associated, Heterochromatin-associated, Chromatin remodelers, ISWI	O60264	P02281, P84233, P06897, P62799	0.477
520	8V7L	EM	2.90	2024-03-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	140	Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 2)	Chio, U.S., Palovcak, E., Smith, A.A.A., Autzen, H., Munoz, E.N., Yu, Z., Wang, F., Agard, D.A., Armache, J.P., Narlikar, G.J., Cheng, Y.	10.1038/s41467-024-46178-y	38472177	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2024	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	Transcription-associated, Heterochromatin-associated, Chromatin remodelers, ISWI	O60264	P02281, P84233, P06897, P62799	0.456
521	6NJ9	EM	2.96	2019-02-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Active state Dot1L bound to the H2B-Ubiquitinated nucleosome, 2-to-1 complex	Worden, E.J., Hoffmann, N.A., Hicks, C.W., Wolberger, C.	10.1016/j.cell.2019.02.002	30765112	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Histone-lysine N-methyltransferase, H3 lysine-79 specific, Ubiquitin	Ubiquitin, Histone_ubiquitination_H2BK120_reader, Histone_methylation_H3K79_writer, Histone PTM writers	Q8TEK3, P0CG47	P02281, P84233, P06897, P62799	0.551
522	6NQA	EM	3.54	2019-02-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Active state Dot1L bound to the H2B-Ubiquitinated nucleosome, 1-to-1 complex	Worden, E.J., Hoffmann, N.A., Hicks, C.W., Wolberger, C.	10.1016/j.cell.2019.02.002	30765112	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Histone-lysine N-methyltransferase, H3 lysine-79 specific, Ubiquitin	Ubiquitin, Histone_ubiquitination_H2BK120_reader, Histone_methylation_H3K79_writer, Histone PTM writers	Q8TEK3, P0CG48	P02281, P84233, P06897, P62799	0.436
523	6VEN	EM	3.37	2020-01-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Yeast COMPASS in complex with a ubiquitinated nucleosome	Worden, E.J., Zhang, X., Wolberger, C.	10.7554/eLife.53199	31922488	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020	Ubiquitin, COMPASS component SWD3, COMPASS component SWD1, Histone-lysine N-methyltransferase, H3 lysine-4 specific, COMPASS component BRE2, COMPASS component SDC1, COMPASS component SPP1	COMPASS, Ubiquitin, Histone_methylation_H3K4_writer, Telomere-associated, Transcription-associated, Histone PTM writers	P0CG48, P38123, P39706, P38827, P43132, Q03323, Q03012	P02281, P84233, P06897, P62799	0.449
524	6X59	EM	2.98	2020-09-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	The mouse cGAS catalytic domain binding to human assembled nucleosome	Zhao, B., Xu, P., Rowlett, C.M., Jing, T., Shinde, O., Lei, Y., West, A.P., Liu, W.R., Li, P.	10.1038/s41586-020-2749-z	32911481	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Cyclic GMP-AMP synthase	DNA repair, Antiviral defense, 2'3'-cGAMP, Synthesis of second messengers	Q8C6L5	P62805, P0C0S8, P62807, Q71DI3	0.54
525	6X5A	EM	4.36	2020-09-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	The mouse cGAS catalytic domain binding to human nucleosome that purified from HEK293T cells	Zhao, B., Xu, P., Rowlett, C.M., Jing, T., Shinde, O., Lei, Y., West, A.P., Liu, W.R., Li, P.	10.1038/s41586-020-2749-z	32911481	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Cyclic GMP-AMP synthase	DNA repair, Antiviral defense, 2'3'-cGAMP, Synthesis of second messengers	Q8C6L5	P62805, P0C0S8, P62807, Q71DI3	0.265
526	6XJD	EM	6.80	2020-09-16	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Two mouse cGAS catalytic domain binding to human assembled nucleosome	Zhao, B., Xu, P., Rowlett, C.M., Jing, T., Shinde, O., Lei, Y., West, A.P., Liu, W.R., Li, P.	10.1038/s41586-020-2749-z	32911481	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Cyclic GMP-AMP synthase	DNA repair, Antiviral defense, 2'3'-cGAMP, Synthesis of second messengers	Q8C6L5	P62805, P0C0S8, P62807, Q71DI3	0.196
527	7JZV	EM	3.90	2021-02-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	139	Cryo-EM structure of the BRCA1-UbcH5c/BARD1 E3-E2 module bound to a nucleosome	Witus, S.R., Burrell, A.L., Farrell, D.P., Kang, J., Wang, M., Hansen, J.M., Pravat, A., Tuttle, L.M., Stewart, M.D., Brzovic, P.S., Chatterjee, C., Zhao, W., DiMaio, F., Kollman, J.M., Klevit, R.E.	10.1038/s41594-020-00556-4	33589814	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2021	BRCA1,Ubiquitin-conjugating enzyme E2 D3, BRCA1-associated RING domain protein 1	E3 ubiquitin-protein ligation, Histone_ubiquitination_H2AK125_writer, DNA repair, Histone_ubiquitination_H2AK127_writer, Histone_ubiquitination_H2AK129_writer, Transcription-associated, Histone PTM writers	P38398, Q99728	P62805, Q6FI13, O60814, Q71DI3	0.313
528	7U50	EM	3.40	2022-09-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	143	APE1 bound to a nucleosome core particle with AP-site at SHL-6	Weaver, T.M., Hoitsma, N.M., Spencer, J.J., Gakhar, L., Schnicker, N.J., Freudenthal, B.D.	10.1038/s41467-022-33057-7	36104361	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	DNA-(apurinic or apyrimidinic site) endonuclease	DNA repair	P27695	P62805, P0C0S8, P62807, Q71DI3	0.415
529	7U51	EM	3.10	2022-09-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	144	Nucleosome core particle with AP-site at SHL-6	Weaver, T.M., Hoitsma, N.M., Spencer, J.J., Gakhar, L., Schnicker, N.J., Freudenthal, B.D.	10.1038/s41467-022-33057-7	36104361	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, P0C0S8, P62807, Q71DI3	0.537
530	7U52	EM	3.40	2022-09-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	144	nucleosome core particle with AP-site at SHL-6.5	Weaver, T.M., Hoitsma, N.M., Spencer, J.J., Gakhar, L., Schnicker, N.J., Freudenthal, B.D.	10.1038/s41467-022-33057-7	36104361	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, P0C0S8, P62807, Q71DI3	0.454
531	7U53	EM	4.00	2022-09-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	143	Nucleosome core particle with AP-site at SHL0	Weaver, T.M., Hoitsma, N.M., Spencer, J.J., Gakhar, L., Schnicker, N.J., Freudenthal, B.D.	10.1038/s41467-022-33057-7	36104361	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, P0C0S8, P62807, Q71DI3	0.385
532	8JLB	EM	2.36	2023-10-04	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant	Oishi, T., Hatazawa, S., Kujirai, T., Kato, J., Kobayashi, Y., Ogasawara, M., Akatsu, M., Ehara, H., Sekine, S.I., Hayashi, G., Takizawa, Y., Kurumizaka, H.	10.1093/nar/gkad754	37718728	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023				P62805, P06899, P04908, Q71DI3	0.602
533	8JLD	EM	2.48	2023-10-04	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail	Oishi, T., Hatazawa, S., Kujirai, T., Kato, J., Kobayashi, Y., Ogasawara, M., Akatsu, M., Ehara, H., Sekine, S.I., Hayashi, G., Takizawa, Y., Kurumizaka, H.	10.1093/nar/gkad754	37718728	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023				P62805, P06899, P04908, Q71DI3	0.579
534	1P3B	X-ray	3.00	2004-02-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants	Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.	10.1038/sj.emboj.7600046	14739929	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2004				P02281, P84233, P06897, P62799	-
535	1P3F	X-ray	2.90	2004-02-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants	Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.	10.1038/sj.emboj.7600046	14739929	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2004				P02281, P84233, P06897, P62799	-
536	1P3G	X-ray	2.70	2004-02-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants	Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.	10.1038/sj.emboj.7600046	14739929	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2004				P02281, P84233, P06897, P62799	-
537	1P3I	X-ray	2.30	2004-02-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants	Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.	10.1038/sj.emboj.7600046	14739929	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2004				P02281, P84233, P06897, P62799	-
538	1P3O	X-ray	2.75	2004-02-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants	Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.	10.1038/sj.emboj.7600046	14739929	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2004				P02281, P84233, P06897, P62799	-
539	1P3P	X-ray	2.70	2004-02-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants	Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.	10.1038/sj.emboj.7600046	14739929	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2004				P02281, P84233, P06897, P62799	-
540	5ONG	X-ray	2.80	2017-11-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	146	X-Ray crystal structure of a nucleosome core particle with its DNA site-specifically crosslinked to the histone octamer	Frouws, T.D., Barth, P.D., Richmond, T.J.	10.1016/j.jmb.2017.10.029	29113904	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017				P02281, P84233, P06897, P62799	-
541	5ONW	X-ray	2.80	2017-11-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	146	X-Ray crystal structure of a nucleosome core particle with its DNA site-specifically crosslinked to the histone octamer and the two H2A/H2B dimers crosslinked via H2A N38C	Frouws, T.D., Barth, P.D., Richmond, T.J.	10.1016/j.jmb.2017.10.029	29113904	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017				P02281, P84233, P06897, P62799	-
542	7CRO	EM	3.75	2020-10-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	168	NSD2 bearing E1099K/T1150A dual mutation in complex with 187-bp NCP	Li, W., Tian, W., Yuan, G., Deng, P., Sengupta, D., Cheng, Z., Cao, Y., Ren, J., Qin, Y., Zhou, Y., Jia, Y., Gozani, O., Patel, D.J., Wang, Z.	10.1038/s41586-020-03069-8	33361816	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus tropicalis		2020	Histone-lysine N-methyltransferase NSD2	Transcription-associated, Euchromatin-associated, Histone_methylation_H3K36_writer, Histone PTM writers	O96028	P02281, Q92133, P06897, P62799	0.448
543	7CRP	EM	3.20	2020-10-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	168	NSD3 bearing E1181K/T1232A dual mutation in complex with 187-bp NCP (1:1 binding mode)	Li, W., Tian, W., Yuan, G., Deng, P., Sengupta, D., Cheng, Z., Cao, Y., Ren, J., Qin, Y., Zhou, Y., Jia, Y., Gozani, O., Patel, D.J., Wang, Z.	10.1038/s41586-020-03069-8	33361816	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus tropicalis		2020	Histone-lysine N-methyltransferase NSD3	Transcription-associated, Histone_methylation_H3K27_writer, Histone_methylation_H3K4_writer, Histone PTM writers	Q9BZ95	P02281, Q92133, P06897, P62799	0.542
544	7CRQ	EM	3.15	2020-10-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	168	NSD3 bearing E1181K/T1232A dual mutation in complex with 187-bp NCP (2:1 binding mode)	Li, W., Tian, W., Yuan, G., Deng, P., Sengupta, D., Cheng, Z., Cao, Y., Ren, J., Qin, Y., Zhou, Y., Jia, Y., Gozani, O., Patel, D.J., Wang, Z.	10.1038/s41586-020-03069-8	33361816	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus tropicalis		2020	Histone-lysine N-methyltransferase NSD3	Transcription-associated, Histone_methylation_H3K27_writer, Histone_methylation_H3K4_writer, Histone PTM writers	Q9BZ95	P02281, Q92133, P06897, P62799	0.507
545	7CRR	EM	3.48	2020-10-21	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	168	Native NSD3 bound to 187-bp nucleosome	Li, W., Tian, W., Yuan, G., Deng, P., Sengupta, D., Cheng, Z., Cao, Y., Ren, J., Qin, Y., Zhou, Y., Jia, Y., Gozani, O., Patel, D.J., Wang, Z.	10.1038/s41586-020-03069-8	33361816	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus tropicalis		2020	Histone-lysine N-methyltransferase NSD3	Transcription-associated, Histone_methylation_H3K27_writer, Histone_methylation_H3K4_writer, Histone PTM writers	Q9BZ95	P02281, Q92133, P06897, P62799	0.464
546	1P3A	X-ray	3.00	2004-02-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants	Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.	10.1038/sj.emboj.7600046	14739929	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2004				P02281, P84233, P06897, P62799	-
547	1P3K	X-ray	2.90	2004-02-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants	Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.	10.1038/sj.emboj.7600046	14739929	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2004				P02281, P84233, P06897, P62799	-
548	7UV9	EM	3.20	2023-02-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	KDM2A-nucleosome structure stabilized by H3K36C-UNC8015 covalent conjugate	Spangler, C.J., Skrajna, A., Foley, C.A., Nguyen, A., Budziszewski, G.R., Azzam, D.N., Arteaga, E.C., Simmons, H.C., Smith, C.B., Wesley, N.A., Wilkerson, E.M., McPherson, J.E., Kireev, D., James, L.I., Frye, S.V., Goldfarb, D., McGinty, R.K.	10.1038/s41589-023-01256-y	36797403	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Lysine-specific demethylase 2A	Heterochromatin-associated, Histone PTM erasers, Centromere-associated, Histone_demethylation_H3K36	Q9Y2K7	P62805, P0C0S8, P62807, Q71DI3	0.42
549	1P34	X-ray	2.70	2004-02-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants	Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.	10.1038/sj.emboj.7600046	14739929	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2004				P02281, P84233, P06897, P62799	-
550	1P3L	X-ray	2.40	2004-02-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants	Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.	10.1038/sj.emboj.7600046	14739929	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2004				P02281, P84233, P06897, P62799	-
551	1P3M	X-ray	2.90	2004-02-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants	Muthurajan, U.M., Bao, Y., Forsberg, L.J., Edayathumangalam, R.S., Dyer, P.N., White, C.L., Luger, K.	10.1038/sj.emboj.7600046	14739929	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2004				P02281, P84233, P06897, P62799	-
552	4Z5T	X-ray	2.80	2016-02-10	octamer	1	H3.5	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The nucleosome containing human H3.5	Urahama, T., Harada, A., Maehara, K., Horikoshi, N., Sato, K., Sato, Y., Shiraishi, K., Sugino, N., Osakabe, A., Tachiwana, H., Kagawa, W., Kimura, H., Ohkawa, Y., Kurumizaka, H.	10.1186/s13072-016-0051-y	26779285	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2016				P62805, P06899, Q6NXT2, P04908	-
553	8KB5	EM	2.26	2023-10-18	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601L	145	Cryo-EM structure of the human nucleosome containing H3.8	Hirai, S., Kujirai, T., Akatsu, M., Ogasawara, M., Ehara, H., Sekine, S.I., Ohkawa, Y., Takizawa, Y., Kurumizaka, H.	10.1093/jb/mvad069	37757444	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023				P62805, P06899, P84243, P04908	0.655
554	7DBH	EM	3.60	2022-01-19	octamer	1	H3.3,canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	126	The mouse nucleosome structure containing H3mm18	Hirai, S., Tomimatsu, K., Miyawaki-Kuwakado, A., Takizawa, Y., Komatsu, T., Tachibana, T., Fukushima, Y., Takeda, Y., Negishi, L., Kujirai, T., Koyama, M., Ohkawa, Y., Kurumizaka, H.	10.1093/nar/gkab1137	34929737	Mus musculus	Mus musculus	Mus musculus	Mus musculus		2022				C0HKE1, None, Q9D2U9, P62806	0.391
555	7VBM	EM	3.40	2022-01-19	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601	126	The mouse nucleosome structure containing H3mm18 aided by PL2-6 scFv	Hirai, S., Tomimatsu, K., Miyawaki-Kuwakado, A., Takizawa, Y., Komatsu, T., Tachibana, T., Fukushima, Y., Takeda, Y., Negishi, L., Kujirai, T., Koyama, M., Ohkawa, Y., Kurumizaka, H.	10.1093/nar/gkab1137	34929737	Mus musculus	Mus musculus	Mus musculus	Mus musculus		2022				C0HKE1, None, Q9D2U9, P62806	0.506
556	5ZBX	X-ray	2.58	2019-02-13	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	The crystal structure of the nucleosome containing histone H3.1 CATD(V76Q, K77D)	Arimura, Y., Tachiwana, H., Takagi, H., Hori, T., Kimura, H., Fukagawa, T., Kurumizaka, H.	10.1038/s41467-019-08314-x	30718488	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P62805, P06899, P04908, P68431	-
557	1AOI	X-ray	2.80	1998-09-30	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	COMPLEX BETWEEN NUCLEOSOME CORE PARTICLE (H3,H4,H2A,H2B) AND 146 BP LONG DNA FRAGMENT	Luger, K., Mader, A.W., Richmond, R.K., Sargent, D.F., Richmond, T.J.	10.1038/38444	9305837	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		1998				P02281, P02302, P06897, P62799	-
558	5AY8	X-ray	2.80	2016-04-06	octamer	1	H3.Y	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal structure of human nucleosome containing H3.Y	Kujirai, T., Horikoshi, N., Sato, K., Maehara, K., Machida, S., Osakabe, A., Kimura, H., Ohkawa, Y., Kurumizaka, H.	10.1093/nar/gkw202	27016736	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2016				P0DPK2, P06899, P04908, P62805	-
559	5Z23	X-ray	2.73	2019-02-13	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal structure of the nucleosome containing a chimeric histone H3/CENP-A CATD	Arimura, Y., Tachiwana, H., Takagi, H., Hori, T., Kimura, H., Fukagawa, T., Kurumizaka, H.	10.1038/s41467-019-08314-x	30718488	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P62805, P06899, P04908, P68431	-
560	3W98	X-ray	3.42	2013-08-28	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	145	Crystal Structure of Human Nucleosome Core Particle lacking H3.1 N-terminal region	Iwasaki, W., Miya, Y., Horikoshi, N., Osakabe, A., Taguchi, H., Tachiwana, H., Shibata, T., Kagawa, W., Kurumizaka, H.	10.1016/j.fob.2013.08.007	24251097	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2013				P62805, P06899, P04908, P68431	-
561	8JLA	EM	3.44	2023-10-04	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601L	156	Cryo-EM structure of the human nucleosome lacking N-terminal region of H2A, H2B, H3, and H4	Oishi, T., Hatazawa, S., Kujirai, T., Kato, J., Kobayashi, Y., Ogasawara, M., Akatsu, M., Ehara, H., Sekine, S.I., Hayashi, G., Takizawa, Y., Kurumizaka, H.	10.1093/nar/gkad754	37718728	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023				P62805, P06899, P04908, P68431	0.453
562	7BXT	EM	4.20	2021-02-10	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	The cryo-EM structure of CENP-A nucleosome in complex with CENP-C peptide and CENP-N N-terminal domain	Ariyoshi, M., Makino, F., Watanabe, R., Nakagawa, R., Kato, T., Namba, K., Arimura, Y., Fujita, R., Kurumizaka, H., Okumura, E.I., Hara, M., Fukagawa, T.	10.15252/embj.2020105671	33463726	Gallus gallus	Homo sapiens	Homo sapiens	Homo sapiens		2021	CENP-C, Maltodextrin-binding protein,Centromere protein N	Kinetochore, Centromere-associated, Nuclear division	O57392, P0AEX9	P84229, P62805, Q16778, P04908	0.387
563	7BY0	EM	4.50	2021-02-10	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	143	The cryo-EM structure of CENP-A nucleosome in complex with the phosphorylated CENP-C	Ariyoshi, M., Makino, F., Watanabe, R., Nakagawa, R., Kato, T., Namba, K., Arimura, Y., Fujita, R., Kurumizaka, H., Okumura, E.I., Hara, M., Fukagawa, T.	10.15252/embj.2020105671	33463726	Gallus gallus	Homo sapiens	Homo sapiens	Homo sapiens		2021	Maltose Binding Protein tag, linker,CENP-C		P0AEX9	P84229, P62805, P06899, P04908	0.297
564	7Y7I	EM	3.42	2022-07-13	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	143	chicken KNL2 in complex with the CENP-A nucleosome	Jiang, H., Ariyoshi, M., Watanabe, R., Makino, F., Namba, K., Fukagawa, T.	10.1101/2022.06.24.497480	0	Gallus gallus	Homo sapiens	Homo sapiens	Homo sapiens		2022	Myb-like domain-containing protein		F1NE16	P62805, P06899, P04908, P68431	0.454
565	7EA8	EM	3.10	2021-07-14	octamer	1	H3.3	canonical_H4	canonical_H2A	canonical_H2B		601	122	Human SETD2 bound to a nucleosome containing oncohistone mutations	Liu, Y., Zhang, Y., Xue, H., Cao, M., Bai, G., Mu, Z., Yao, Y., Sun, S., Fang, D., Huang, J.	10.1038/s41421-021-00261-6	33972509	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2021	Histone-lysine N-methyltransferase SETD2	Transcription-associated, Heterochromatin-associated, Histone PTM writers, Histone_methylation_H3K36_writer	Q9BYW2	Q6PI79, P06899, P62799, P20671	0.509
566	7K78	EM	3.10	2021-03-31	octamer	1	cenH3	canonical_H4	H2A.X	canonical_H2B			116	antibody and nucleosome complex	Guan, R., Lian, T., Zhou, B.R., He, E., Wu, C., Singleton, M., Bai, Y.	10.1038/s41467-021-21985-9	33741944	Saccharomyces cerevisiae	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)		2021	scFv			P02309, None, P04911, P02293	0.556
567	7YRD	EM	3.20	2023-08-16	octamer	1	canonical_H3	canonical_H4	H2A.Z	canonical_H2B		alphasat_146	146	histone methyltransferase	Huang, L., Wang, Y., Long, H., Zhu, H., Wen, Z., Zhang, L., Zhang, W., Guo, Z., Wang, L., Tang, F., Hu, J., Bao, K., Zhu, P., Li, G., Zhou, Z.	10.1016/j.molcel.2023.07.001	37536340	Xenopus laevis	Xenopus laevis	Homo sapiens	Xenopus laevis		2023	[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B	Transcription-associated, Histone_methylation_H4K20_writer, Heterochromatin-associated, Histone PTM writers	Q4FZB7	P62805, P06899, P0C0S5, Q71DI3	0.484
568	7YRG	EM	4.20	2023-12-13	octamer	1	canonical_H3	canonical_H4	H2A.Z	canonical_H2B		alphasat_146	146	histone methyltransferase	Huang, L., Wang, Y., Long, H., Zhu, H., Wen, Z., Zhang, L., Zhang, W., Guo, Z., Wang, L., Tang, F., Hu, J., Bao, K., Zhu, P., Li, G., Zhou, Z.	10.1016/j.molcel.2023.07.001	37536340	Xenopus laevis	Xenopus laevis	Homo sapiens	Xenopus laevis		2023	[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B	Transcription-associated, Histone_methylation_H4K20_writer, Heterochromatin-associated, Histone PTM writers	Q4FZB7	P02281, P84233, P62799, P0C0S5	0.227
569	7EA5	EM	3.30	2021-07-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Yeast Set2 bound to a nucleosome containing oncohistone mutations	Liu, Y., Zhang, Y., Xue, H., Cao, M., Bai, G., Mu, Z., Yao, Y., Sun, S., Fang, D., Huang, J.	10.1038/s41421-021-00261-6	33972509	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	Histone-lysine N-methyltransferase, H3 lysine-36 specific	Transcription-associated, Histone_methylation_H3K36_writer, Histone PTM writers	P46995	P02281, P84233, P62799, Q6AZJ8	0.473
570	7WLR	EM	3.54	2022-07-13	octamer	1	H3.3	canonical_H4	H2A.X	canonical_H2B		601	145	Cryo-EM structure of the nucleosome containing Komagataella pastoris histones	Fukushima, Y., Hatazawa, S., Hirai, S., Kujirai, T., Ehara, H., Sekine, S.I., Takizawa, Y., Kurumizaka, H.	10.1093/jb/mvac043	35485963	Komagataella pastoris	Komagataella pastoris	Komagataella pastoris	Komagataella pastoris		2022				A0A1B2JB78, A0A1B2JBS1, A0A1B2JA70, A0A1B2JD99	0.45
571	7YQK	EM	3.38	2022-08-17	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		601	145	cryo-EM structure of gammaH2AXK15ub-H4K20me2 nucleosome bound to 53BP1	Ai, H., Chu, G.C., Gong, Q., Tong, Z.B., Deng, Z., Liu, X., Yang, F., Xu, Z., Li, J.B., Tian, C., Liu, L.	10.1021/jacs.2c06156	36166692	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	UDR motif of 53BP1, TP53-binding protein 1, Polyubiquitin-B	Ubiquitin, DNA repair, Telomere-associated, Histone PTM readers, Histone_ubiquitination_H2AK15_reader, Histone_methylation_H4K20_reader	Q12888, P0CG47	P62805, O60814, P68431, P16104	0.424
572	6FQ5	EM	3.80	2018-04-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Class 1 : canonical nucleosome	Bilokapic, S., Strauss, M., Halic, M.	10.1038/s41467-018-03677-z	29626188	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2018				P02281, P84233, P06897, P62799	0.301
573	6FQ6	EM	4.00	2018-04-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Class 2 : distorted nucleosome	Bilokapic, S., Strauss, M., Halic, M.	10.1038/s41467-018-03677-z	29626188	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2018				P02281, P84233, P06897, P62799	0.235
574	6FQ8	EM	4.80	2018-04-18	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Class 3 : translocated nucleosome	Bilokapic, S., Strauss, M., Halic, M.	10.1038/s41467-018-03677-z	29626188	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2018				P02281, P02302, P06897, P62799	0.196
575	6R1T	EM	4.02	2019-04-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Structure of LSD2/NPAC-linker/nucleosome core particle complex: Class 1, free nuclesome	Marabelli, C., Marrocco, B., Pilotto, S., Chittori, S., Picaud, S., Marchese, S., Ciossani, G., Forneris, F., Filippakopoulos, P., Schoehn, G., Rhodes, D., Subramaniam, S., Mattevi, A.	10.1016/j.celrep.2019.03.061	30970244	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019				P02281, P84233, P06897, P62799	0.339
576	7KTQ	EM	3.30	2021-02-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	164	Nucleosome from a dimeric PRC2 bound to a nucleosome	Grau, D., Zhang, Y., Lee, C.H., Valencia-Sanchez, M., Zhang, J., Wang, M., Holder, M., Svetlov, V., Tan, D., Nudler, E., Reinberg, D., Walz, T., Armache, K.J.	10.1038/s41467-020-20775-z	33514705	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021				P02281, P84233, P62799, Q6AZJ8	0.494
577	7XD0	EM	3.48	2022-04-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	cryo-EM structure of H2BK34ub nucleosome	Ai, H., Sun, M., Liu, A., Sun, Z., Liu, T., Cao, L., Liang, L., Qu, Q., Li, Z., Deng, Z., Tong, Z., Chu, G., Tian, X., Deng, H., Zhao, S., Li, J.B., Lou, Z., Liu, L.	10.1038/s41589-022-01067-7	35739357	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Ubiquitin-60S ribosomal protein L40	Ubiquitin	P62987	P62805, Q2M2T1, P04908, Q71DI3	0.457
578	7XD1	EM	3.20	2022-04-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	cryo-EM structure of unmodified nucleosome	Ai, H., Sun, M., Liu, A., Sun, Z., Liu, T., Cao, L., Liang, L., Qu, Q., Li, Z., Deng, Z., Tong, Z., Chu, G., Tian, X., Deng, H., Zhao, S., Li, J.B., Lou, Z., Liu, L.	10.1038/s41589-022-01067-7	35739357	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022				P62805, O60814, P04908, P68431	0.558
579	8GRM	EM	3.05	2023-04-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	144	Cryo-EM structure of PRC1 bound to H2AK119-UbcH5b-Ub nucleosome	Ai, H.S., Tong, Z., Deng, Z., Tian, J., Zhang, L., Sun, M., Du, Y., Xu, Z., Shi, Q., Liang, L., Zheng, Q., Li, J.B., Pan, M., Liu, L.	10.1016/j.chempr.2023.01.012	0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	COMMD3 protein, Ring1B, Ubiquitin, UbcH5b	E3 ubiquitin-protein ligation, Ubiquitin, Polycomb, Histone_ubiquitination_H2AK119_writer, Transcription-associated, Histone PTM writers	P35226, Q99496, P0CG47, P62837	P62805, O60814, P04908, P68431	0.516
580	8IEG	EM	3.44	2023-09-06	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Bre1(mRBD-RING)/Rad6-Ub/nucleosome complex	Deng, Z., Ai, H., Sun, M., Tong, Z., Du, Y., Qu, Q., Zhang, L., Xu, Z., Tao, S., Shi, Q., Li, J.B., Pan, M., Liu, L.	10.1016/j.molcel.2023.08.001	37633270	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	E3 ubiquitin-protein ligase BRE1, Ubiquitin-conjugating enzyme E2 2	E3 ubiquitin-protein ligation, DNA repair, Telomere-associated, Histone_ubiquitination_H2BK123_writer, Transcription-associated, Histone PTM writers	Q07457, P06104	P62805, O60814, P04908, P68431	0.393
581	8IEJ	EM	3.12	2023-09-06	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	RNF20-RNF40/hRad6A-Ub/nucleosome complex	Deng, Z., Ai, H., Sun, M., Tong, Z., Du, Y., Qu, Q., Zhang, L., Xu, Z., Tao, S., Shi, Q., Li, J.B., Pan, M., Liu, L.	10.1016/j.molcel.2023.08.001	37633270	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	E3 ubiquitin-protein ligase BRE1B, E3 ubiquitin-protein ligase BRE1A, Ubiquitin-conjugating enzyme E2 A	E3 ubiquitin-protein ligation, DNA repair, Histone_ubiquitination_H2BK120_writer, Transcription-associated, Histone PTM writers	O75150, Q5VTR2, P49459	P62805, O60814, P04908, P68431	0.461
582	8WG5	EM	3.05	2023-12-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of USP16 bound to H2AK119Ub nucleosome	Ai, H.S., He, Z.Z., Deng, Z.H., Liu, L.		0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Ubiquitin carboxyl-terminal hydrolase 16, Ubiquitin B	Transcription-associated, Histone_deubiquitination_H2AK119, Ubiquitin	Q9Y5T5, P0CG47	P62805, O60814, P04908, P68431	0.306
583	4XZQ	X-ray	2.40	2015-10-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	Nucleosome disassembly by RSC and SWI/SNF is enhanced by H3 acetylation near the nucleosome dyad axis	Chatterjee, N., North, J.A., Dechassa, M.L., Manohar, M., Prasad, R., Luger, K., Ottesen, J.J., Poirier, M.G., Bartholomew, B.	10.1128/MCB.00441-15	26416878	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2015				P02281, P84233, P06897, P62799	-
584	4YS3	X-ray	3.00	2015-10-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	Nucleosome disassembly by RSC and SWI/SNF is enhanced by H3 acetylation near the nucleosome dyad axis	Chatterjee, N., North, J.A., Dechassa, M.L., Manohar, M., Prasad, R., Luger, K., Ottesen, J.J., Poirier, M.G., Bartholomew, B.	10.1128/MCB.00441-15	26416878	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2015				P02281, P84233, P06897, P62799	-
585	4Z66	X-ray	2.50	2015-10-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	147	Nucleosome disassembly by RSC and SWI/SNF is enhanced by H3 acetylation near the nucleosome dyad axis	Chatterjee, N., North, J.A., Dechassa, M.L., Manohar, M., Prasad, R., Luger, K., Ottesen, J.J., Poirier, M.G., Bartholomew, B.	10.1128/MCB.00441-15	26416878	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2015				P02281, P84233, P06897, P62799	-
586	6IPU	X-ray	1.99	2020-01-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Human nucleosome core particle containing 145 bp of DNA	Sharma, D., De Falco, L., Padavattan, S., Rao, C., Geifman-Shochat, S., Liu, C.F., Davey, C.A.	10.1038/s41467-019-13641-0	31848352	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, P06899, P04908, P68431	-
587	6IQ4	X-ray	2.25	2019-10-30	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Nucleosome core particle cross-linked with a hetero-binuclear molecule possessing RAPTA and gold(I) 4-(diphenylphosphino)benzoic acid groups.	Batchelor, L.K., De Falco, L., von Erlach, T., Sharma, D., Adhireksan, Z., Roethlisberger, U., Davey, C.A., Dyson, P.J.	10.1002/anie.201906423	31478581	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P62805, P06899, P04908, P68431	-
588	6JXD	X-ray	2.25	2020-01-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601_modified	147	Human nucleosome core particle with cohesive end DNA termini	Sharma, D., De Falco, L., Padavattan, S., Rao, C., Geifman-Shochat, S., Liu, C.F., Davey, C.A.	10.1038/s41467-019-13641-0	31848352	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, P06899, P04908, P68431	-
589	7CCQ	EM	3.80	2020-10-07	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Structure of the 1:1 cGAS-nucleosome complex	Cao, D., Han, X., Fan, X., Xu, R.M., Zhang, X.	10.1038/s41422-020-00422-4	33051594	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Cyclic GMP-AMP synthase	DNA repair, Antiviral defense, 2'3'-cGAMP, Synthesis of second messengers	Q8N884	P62805, P06899, P04908, P68431	0.371
590	7CCR	EM	4.90	2020-10-07	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Structure of the 2:2 cGAS-nucleosome complex	Cao, D., Han, X., Fan, X., Xu, R.M., Zhang, X.	10.1038/s41422-020-00422-4	33051594	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Cyclic GMP-AMP synthase	DNA repair, Antiviral defense, 2'3'-cGAMP, Synthesis of second messengers	Q8N884	P62805, P06899, P04908, P68431	0.152
591	8OL1	EM	3.50	2024-02-14	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	cGAS-Nucleosome in complex with SPSB3-ELOBC (composite structure)	Xu, P., Liu, Y., Liu, C., Guey, B., Li, L., Melenec, P., Ricci, J., Ablasser, A.	10.1038/s41586-024-07112-w	38418882	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2024	Cyclic GMP-AMP synthase, SPRY domain-containing SOCS box protein 3, Elongin-C, Elongin-B	Antiviral defense, Synthesis of second messengers, E3 ubiquitin-protein ligation, DNA repair, Transcription factors, Transcription-associated, 2'3'-cGAMP	Q8N884, Q6PJ21, Q15369, Q15370	Q71DI3, Q99878, Q99877, Q96KK5, P62805, Q93079	0.4
592	6FTX	EM	4.50	2018-08-08	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	159	Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome	Sundaramoorthy, R., Hughes, A.L., El-Mkami, H., Norman, D.G., Ferreira, H., Owen-Hughes, T.	10.7554/eLife.35720	30079888	Petromyzon marinus,Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus tropicalis		2018	Polyubiquitin-B, Chromatin-remodeling ATPase	Transcription-associated, Ubiquitin, CHD, Chromatin remodelers	P0CG47, P32657	Q28D68, P06897, S4RAZ3, P62799, P02302	0.23
593	6IY2	EM	3.47	2019-04-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		MMTV	147	Structure of Snf2-MMTV-A nucleosome complex at shl2 in ADP state	Li, M., Xia, X., Tian, Y., Jia, Q., Liu, X., Lu, Y., Li, M., Li, X., Chen, Z.	10.1038/s41586-019-1029-2	30867599	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Transcription regulatory protein SNF2	Transcription-associated, Chromatin remodelers, SWI/SNF	P22082	P02281, P84233, P06897, P62799	0.427
594	6IY3	EM	3.67	2019-04-03	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		MMTV	147	Structure of Snf2-MMTV-A nucleosome complex at shl-2 in ADP state	Li, M., Xia, X., Tian, Y., Jia, Q., Liu, X., Lu, Y., Li, M., Li, X., Chen, Z.	10.1038/s41586-019-1029-2	30867599	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Transcription regulatory protein SNF2	Transcription-associated, Chromatin remodelers, SWI/SNF	P22082	P02281, P84233, P06897, P62799	0.399
595	6JM9	EM	7.30	2019-05-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	123	cryo-EM structure of DOT1L bound to unmodified nucleosome	Jang, S., Kang, C., Yang, H.S., Jung, T., Hebert, H., Chung, K.Y., Kim, S.J., Hohng, S., Song, J.J.	10.1101/gad.323790.118	30923167	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Histone-lysine N-methyltransferase, H3 lysine-79 specific	Histone_ubiquitination_H2BK120_reader, Histone_methylation_H3K79_writer, Histone PTM writers	Q8TEK3	P02281, P84233, P62799, Q6AZJ8	0.132
596	6JMA	EM	6.80	2019-05-15	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	114	cryo-EM structure of DOT1L bound to H2B ubiquitinated nucleosome	Jang, S., Kang, C., Yang, H.S., Jung, T., Hebert, H., Chung, K.Y., Kim, S.J., Hohng, S., Song, J.J.	10.1101/gad.323790.118	30923167	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2019	Histone-lysine N-methyltransferase, H3 lysine-79 specific, Ubiquitin	Ubiquitin, Histone_ubiquitination_H2BK120_reader, Histone_methylation_H3K79_writer, Histone PTM writers	Q8TEK3, P0CG47	P02281, P84233, P62799, Q6AZJ8	0.144
597	6Z6P	EM	4.43	2021-02-17	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	HDAC-PC-Nuc	Lee, J.H., Bollschweiler, D., Schafer, T., Huber, R.	10.1126/sciadv.abd4413	33523989	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	Histone deacetylase HDA1, HDA1 complex subunit 3,HDA1 complex subunit 3, HDA1 complex subunit 2	Transcription-associated, Histone PTM erasers, Histone_deacetylation, HDA1	P53973, Q06623, Q06629	P02281, P06897, Q6AZJ8, P62799, P84233	0.189
598	7XYF	EM	4.30	2023-12-06	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of Fft3-nucleosome complex with Fft3 bound to SHL+2 position of the nucleosome	Nan, Z., Tao, J., Yangao, H.		0	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster		2023	ATP-dependent helicase fft3	Heterochromatin-associated, Chromatin remodeling	O42861	P02299, P02283, P84051, P84040	0.272
599	3KWQ	X-ray	3.50	2010-05-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Structural characterization of H3K56Q nucleosomes and nucleosomal arrays	Watanabe, S., Resch, M., Lilyestrom, W., Clark, N., Hansen, J.C., Peterson, C., Luger, K.	10.1016/j.bbagrm.2010.01.009	20100606	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2010				P02281, P84233, P06897, P62799	-
600	7K6P	EM	3.20	2021-02-10	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Active state Dot1 bound to the unacetylated H4 nucleosome	Valencia-Sanchez, M.I., De Ioannes, P., Wang, M., Truong, D.M., Lee, R., Armache, J.P., Boeke, J.D., Armache, K.J.	10.1126/science.abc6663	33479126	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	Histone-lysine N-methyltransferase, H3 lysine-79 specific, Ubiquitin	Histone_methylation_H3K79_writer, Telomere-associated, Histone PTM writers, Ubiquitin	Q04089, P0CG48	P02281, P84233, P06897, P62799	0.473
601	7K6Q	EM	3.10	2021-02-10	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Active state Dot1 bound to the H4K16ac nucleosome	Valencia-Sanchez, M.I., De Ioannes, P., Wang, M., Truong, D.M., Lee, R., Armache, J.P., Boeke, J.D., Armache, K.J.	10.1126/science.abc6663	33479126	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2021	Histone-lysine N-methyltransferase, H3 lysine-79 specific, Ubiquitin	Histone_methylation_H3K79_writer, Telomere-associated, Histone PTM writers, Ubiquitin	Q04089, P0CG48	P02281, P84233, P06897, P62799	0.489
602	7XCR	EM	2.57	2022-04-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of Dot1L and H2BK34ub-H3K79Nle nucleosome 1:1 complex	Ai, H., Sun, M., Liu, A., Sun, Z., Liu, T., Cao, L., Liang, L., Qu, Q., Li, Z., Deng, Z., Tong, Z., Chu, G., Tian, X., Deng, H., Zhao, S., Li, J.B., Lou, Z., Liu, L.	10.1038/s41589-022-01067-7	35739357	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Histone-lysine N-methyltransferase, H3 lysine-79 specific, Ubiquitin	Ubiquitin, Histone_ubiquitination_H2BK120_reader, Histone_methylation_H3K79_writer, Histone PTM writers	Q8TEK3, P0CG47	P62805, O60814, P04908, Q71DI3	0.571
603	7XCT	EM	2.72	2022-04-20	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Cryo-EM structure of Dot1L and H2BK34ub-H3K79Nle nucleosome 2:1 complex	Ai, H., Sun, M., Liu, A., Sun, Z., Liu, T., Cao, L., Liang, L., Qu, Q., Li, Z., Deng, Z., Tong, Z., Chu, G., Tian, X., Deng, H., Zhao, S., Li, J.B., Lou, Z., Liu, L.	10.1038/s41589-022-01067-7	35739357	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Histone-lysine N-methyltransferase, H3 lysine-79 specific, Ubiquitin	Ubiquitin, Histone_ubiquitination_H2BK120_reader, Histone_methylation_H3K79_writer, Histone PTM writers	Q8TEK3, P0CG47	P62805, O60814, P04908, Q71DI3	0.514
604	5MLU	X-ray	2.80	2017-05-10	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Crystal structure of the PFV GAG CBS bound to a mononucleosome	Lesbats, P., Serrao, E., Maskell, D.P., Pye, V.E., O'Reilly, N., Lindemann, D., Engelman, A.N., Cherepanov, P.	10.1073/pnas.1621159114	28490494	Xenopus laevis	Xenopus laevis	Xenopus laevis	Xenopus laevis		2017	PFV GAG peptide	Viral, DNA integration	P14349	P02281, P84233, P06897, P62799	-
605	6Y5D	EM	4.10	2020-09-23	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	153	Structure of human cGAS (K394E) bound to the nucleosome	Pathare, G.R., Decout, A., Gluck, S., Cavadini, S., Makasheva, K., Hovius, R., Kempf, G., Weiss, J., Kozicka, Z., Guey, B., Melenec, P., Fierz, B., Thoma, N.H., Ablasser, A.	10.1038/s41586-020-2750-6	32911482	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Cyclic GMP-AMP synthase	DNA repair, Antiviral defense, 2'3'-cGAMP, Synthesis of second messengers	Q8N884	O60814, P62805, Q6FI13, Q71DI3	0.195
606	8GRQ	EM	3.87	2023-04-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of BRCA1/BARD1 bound to H2AK127-UbcH5c-Ub nucleosome	Ai, H.S., Tong, Z., Deng, Z., Tian, J., Zhang, L., Sun, M., Du, Y., Xu, Z., Shi, Q., Liang, L., Zheng, Q., Li, J.B., Pan, M., Liu, L.	10.1016/j.chempr.2023.01.012	0	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Breast cancer type 1 susceptibility protein, BRCA1-associated RING domain protein 1, Ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast), isoform CRA_a	E3 ubiquitin-protein ligation, Histone_ubiquitination_H2AK125_writer, DNA repair, Histone_ubiquitination_H2AK127_writer, Histone_ubiquitination_H2AK129_writer, Transcription-associated, Histone PTM writers	P38398, Q99728, P61077	P62805, O60814, P04908, Q71DI3	0.352
607	8HQY	EM	3.05	2023-09-27	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	136	Cryo-EM structure of SSX1 bound to the H2AK119Ub nucleosome at a resolution of 3.05 angstrom	Tong, Z., Ai, H., Xu, Z., He, K., Chu, G.C., Shi, Q., Deng, Z., Xue, Q., Sun, M., Du, Y., Liang, L., Li, J.B., Pan, M., Liu, L.	10.1038/s41594-023-01141-1	38177667	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Protein SSX2, Polyubiquitin-B (Fragment)	Transcription-associated, Ubiquitin, Histone_ubiquitination_H2AK119_reader, Histone PTM readers	Q16385, P0CG47	P62805, O60814, P04908, Q71DI3	0.47
608	8HR1	EM	3.02	2023-09-13	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	147	Cryo-EM structure of SSX1 bound to the unmodified nucleosome at a resolution of 3.02 angstrom	Tong, Z., Ai, H., Xu, Z., He, K., Chu, G.C., Shi, Q., Deng, Z., Xue, Q., Sun, M., Du, Y., Liang, L., Li, J.B., Pan, M., Liu, L.	10.1038/s41594-023-01141-1	38177667	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	SSX1		Q16384	P62805, O60814, P04908, Q71DI3	0.532
609	8OTT	EM	3.30	2023-05-24	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	144	MYC-MAX bound to a nucleosome at SHL+5.8	Michael, A.K., Stoos, L., Crosby, P., Eggers, N., Nie, X.Y., Makasheva, K., Minnich, M., Healy, K.L., Weiss, J., Kempf, G., Cavadini, S., Kater, L., Seebacher, J., Vecchia, L., Chakraborty, D., Isbel, L., Grand, R.S., Andersch, F., Fribourgh, J.L., Schubeler, D., Zuber, J., Liu, A.C., Becker, P.B., Fierz, B., Partch, C.L., Menet, J.S., Thoma, N.H.	10.1038/s41586-023-06282-3	37407816	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2023	Myc proto-oncogene protein, Protein max	Transcription-associated, Transcription factors	P01106, P61244	P62805, P06899, P04908, P68431	0.411
610	6KE9	X-ray	2.22	2020-04-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		telomeric_human	145	The Human Telomeric Nucleosome Displays Distinct Structural and Dynamic Properties	Soman, A., Liew, C.W., Teo, H.L., Berezhnoy, N.V., Olieric, V., Korolev, N., Rhodes, D., Nordenskiold, L.	10.1093/nar/gkaa289	32374876	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, O60814, P04908, P68431	-
611	6L9H	X-ray	2.60	2020-04-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		telomeric_human	145	The Human Telomeric Nucleosome Displays Distinct Structural and Dynamic Properties	Soman, A., Liew, C.W., Teo, H.L., Berezhnoy, N.V., Olieric, V., Korolev, N., Rhodes, D., Nordenskiold, L.	10.1093/nar/gkaa289	32374876	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, O60814, P04908, P68431	-
612	6LE9	X-ray	2.60	2020-04-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		telomeric_human	145	The Human Telomeric Nucleosome Displays Distinct Structural and Dynamic Properties	Soman, A., Liew, C.W., Teo, H.L., Berezhnoy, N.V., Olieric, V., Korolev, N., Rhodes, D., Nordenskiold, L.	10.1093/nar/gkaa289	32374876	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, O60814, P04908, P68431	-
613	6Y5E	EM	3.15	2020-09-23	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	153	Structure of human cGAS (K394E) bound to the nucleosome (focused refinement of cGAS-NCP subcomplex)	Pathare, G.R., Decout, A., Gluck, S., Cavadini, S., Makasheva, K., Hovius, R., Kempf, G., Weiss, J., Kozicka, Z., Guey, B., Melenec, P., Fierz, B., Thoma, N.H., Ablasser, A.	10.1038/s41586-020-2750-6	32911482	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2020	Cyclic GMP-AMP synthase	DNA repair, Antiviral defense, 2'3'-cGAMP, Synthesis of second messengers	Q8N884	P62805, O60814, Q16777, Q71DI3	0.43
614	4X23	X-ray	3.50	2014-12-10	octamer, octamer	2	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	146	CRYSTAL STRUCTURE OF CENP-C IN COMPLEX WITH THE NUCLEOSOME CORE PARTICLE	Kato, H., Jiang, J.S., Zhou, B.R., Rozendaal, M., Feng, H., Ghirlando, R., Xiao, T.S., Straight, A.F., Bai, Y.	10.1126/science.1235532	23723239	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster	Drosophila melanogaster		2014	CENP-C	Kinetochore, Centromere-associated, Nuclear division	Q66LH7	P02299, P02283, P84051, P84040	-
615	6KXV	X-ray	3.63	2020-07-22	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_146	146	Crystal structure of a nucleosome containing Leishmania histone H3	Dacher, M., Tachiwana, H., Horikoshi, N., Kujirai, T., Taguchi, H., Kimura, H., Kurumizaka, H.	10.1093/nar/gkz1040	31722422	Leishmania major	Homo sapiens	Homo sapiens	Homo sapiens		2020				P62805, P06899, Q4QHB5, P04908	-
616	7D69	EM	3.57	2021-09-08	octamer	1	canonical_H3	canonical_H4	H2A.X	canonical_H2B		601L	125	Cryo-EM structure of the nucleosome containing Giardia histones	Sato, S., Takizawa, Y., Hoshikawa, F., Dacher, M., Tanaka, H., Tachiwana, H., Kujirai, T., Iikura, Y., Ho, C.H., Adachi, N., Patwal, I., Flaus, A., Kurumizaka, H.	10.1093/nar/gkab644	34352093	Giardia intestinalis	Giardia intestinalis	Giardia intestinalis	Giardia intestinalis		2021				A8BHS7, A8BUJ9, A8BI78, E2RU29	0.427
617	8COM	EM	3.30	2023-07-12	octamer	1	canonical_H3	canonical_H4	canonical_H2A	canonical_H2B		601	127	Structure of the Nucleosome Core Particle from Trypanosoma brucei	Deak, G., Wapenaar, H., Sandoval, G., Chen, R., Taylor, M.R.D., Burdett, H., Watson, J.A., Tuijtel, M.W., Webb, S., Wilson, M.D.	10.1093/nar/gkad577	37427792	Trypanosoma brucei brucei TREU927	Trypanosoma brucei brucei TREU927	Trypanosoma brucei brucei TREU927	Trypanosoma brucei brucei TREU927		2023				Q57YA3, Q389T1, Q4GYX7, Q57Z31	0.439
618	6QLD	EM	4.15	2019-10-02	octamer	1	cenH3	canonical_H4	H2A.X	canonical_H2B		601	124	Structure of inner kinetochore CCAN-Cenp-A complex	Yan, K., Yang, J., Zhang, Z., McLaughlin, S.H., Chang, L., Fasci, D., Ehrenhofer-Murray, A.E., Heck, A.J.R., Barford, D.	10.1038/s41586-019-1609-1	31578520	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)		2019	Inner kinetochore subunit MIF2, Inner kinetochore subunit MCM16, Inner kinetochore subunit CTF3, Inner kinetochore subunit MCM22, Inner kinetochore subunit IML3, Inner kinetochore subunit CHL4, Inner kinetochore subunit MCM21, Inner kinetochore subunit CTF19, Inner kinetochore subunit OKP1, Inner kinetochore subunit AME1, Inner kinetochore subunit NKP1, Inner kinetochore subunit NKP2	CCAN, Kinetochore, Centromere-associated, Nuclear division	P35201, Q12262, Q12748, P47167, P38265, P38907, Q06675, Q02732, P53298, P38313, Q12493, Q06162	P02309, P04911, P02293, P36012, P02294	0.328
619	6UPH	EM	2.70	2019-11-06	octamer	1	cenH3	canonical_H4	H2A.X	canonical_H2B		601	119	Structure of a Yeast Centromeric Nucleosome at 2.7 Angstrom resolution	Migl, D., Kschonsak, M., Arthur, C.P., Khin, Y., Harrison, S.C., Ciferri, C., Dimitrova, Y.N.	10.1016/j.str.2019.12.002	32004465	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)	Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)	Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)		2019				Q6CK60, Q6CMU6, Q6CK59, P36012	0.623
620	7ON1	EM	3.35	2021-07-07	octamer	1	cenH3	canonical_H4	H2A.X	canonical_H2B		601	123	Cenp-A nucleosome in complex with Cenp-C	Yan, K., Yang, J., Zhang, Z., Barford, D.		0	Saccharomyces cerevisiae	Saccharomyces cerevisiae	Saccharomyces cerevisiae	Saccharomyces cerevisiae		2021	BJ4_G0006610.mRNA.1.CDS.1	CCAN, Kinetochore, Centromere-associated, Nuclear division	P35201	P02309, P04911, P02293, P36012	0.47
621	8OW0	EM	3.40	2023-08-09	octamer	1	cenH3	canonical_H4	H2A.X	canonical_H2B		601_modified	121	Cryo-EM structure of CBF1-CCAN bound topologically to a centromeric CENP-A nucleosome	Dendooven, T., Zhang, Z., Yang, J., McLaughlin, S.H., Schwab, J., Scheres, S.H.W., Yatskevich, S., Barford, D.	10.1126/sciadv.adg7480	37506202	Saccharomyces cerevisiae	Saccharomyces cerevisiae	Saccharomyces cerevisiae	Saccharomyces cerevisiae		2023	Centromere-binding protein 1, Inner kinetochore subunit MCM16, Inner kinetochore subunit CTF3, Inner kinetochore subunit MCM22, Inner kinetochore subunit IML3, Inner kinetochore subunit CHL4, Inner kinetochore subunit MCM21, Inner kinetochore subunit CTF19, Inner kinetochore subunit OKP1, Inner kinetochore subunit CNN1, Inner kinetochore subunit AME1, Inner kinetochore subunit WIP1, Inner kinetochore subunit NKP1, Inner kinetochore subunit NKP2	Kinetochore, CCAN, Transcription-associated, Centromere-associated, Nuclear division	P17106, Q12262, Q12748, P47167, P38265, P38907, Q06675, Q02732, P53298, P43618, P38313, Q2V2P8, Q12493, Q06162	P02309, P04911, P02293, P36012	0.2
622	3AN2	X-ray	3.60	2011-07-20	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_4_palindorm	121	The structure of the centromeric nucleosome containing CENP-A	Tachiwana, H., Kagawa, W., Shiga, T., Osakabe, A., Miya, Y., Saito, K., Hayashi-Takanaka, Y., Oda, T., Sato, M., Park, S.-Y., Kimura, H., Kurumizaka, H.	10.1038/nature10258	21743476	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2011				P62805, P06899, P04908, P49450	-
623	6BUZ	EM	3.92	2017-12-20	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Cryo-EM structure of CENP-A nucleosome in complex with kinetochore protein CENP-N	Chittori, S., Hong, J., Saunders, H., Feng, H., Ghirlando, R., Kelly, A.E., Bai, Y., Subramaniam, S.	10.1126/science.aar2781	29269420	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2017	Maltose-binding periplasmic protein, Centromere protein N chimera		P0AEX9	P62805, P06899, P04908, P49450	0.372
624	6C0W	EM	4.00	2018-01-17	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		601	139	Cryo-EM structure of human kinetochore protein CENP-N with the centromeric nucleosome containing CENP-A	Pentakota, S., Zhou, K., Smith, C., Maffini, S., Petrovic, A., Morgan, G.P., Weir, J.R., Vetter, I.R., Musacchio, A., Luger, K.	10.7554/eLife.33442	29280735	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2018	Centromere protein N	Kinetochore, Centromere-associated, Nuclear division, CENP-A NAC/CAD	Q96H22	P62805, P62807, P49450, Q93077	0.39
625	6E0C	EM	2.63	2019-05-22	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		601	146	Cryo-EM structure of the CENP-A nucleosome (W601) in complex with a single chain antibody fragment	Zhou, B.R., Yadav, K.N.S., Borgnia, M., Hong, J., Cao, B., Olins, A.L., Olins, D.E., Bai, Y., Zhang, P.	10.1038/s41467-019-10247-4	31127102	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	scFv			P62805, P06899, P04908, P49450	0.59
626	6E0P	EM	2.60	2019-05-22	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_native	145	Cryo-EM structure of the centromeric nucleosome (Native alpha satellite DNA) in complex with a single chain antibody fragment	Zhou, B.R., Yadav, K.N.S., Borgnia, M., Hong, J., Cao, B., Olins, A.L., Olins, D.E., Bai, Y., Zhang, P.	10.1038/s41467-019-10247-4	31127102	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	scFv			P62805, P06899, P04908, P49450	0.57
627	6MUO	EM	3.60	2019-07-24	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_native	147	CENP-A nucleosome bound by two copies of CENP-C(CD) and one copy CENP-N(NT)	Allu, P.K., Dawicki-McKenna, J.M., Van Eeuwen, T., Slavin, M., Braitbard, M., Xu, C., Kalisman, N., Murakami, K., Black, B.E.	10.1016/j.cub.2019.06.062	31353180	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	Centromere protein C, Centromere protein N	Kinetochore, Centromere-associated, Nuclear division, CENP-A NAC/CAD	Q03188, Q96H22	Q5QNW6, P62805, P49450, Q93077	0.369
628	6MUP	EM	3.50	2019-07-24	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_native	147	CENP-A nucleosome bound by two copies of CENP-C(CD) and two copies CENP-N(NT)	Allu, P.K., Dawicki-McKenna, J.M., Van Eeuwen, T., Slavin, M., Braitbard, M., Xu, C., Kalisman, N., Murakami, K., Black, B.E.	10.1016/j.cub.2019.06.062	31353180	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	Centromere protein C, Centromere protein N	Kinetochore, Centromere-associated, Nuclear division, CENP-A NAC/CAD	Q03188, Q96H22	Q5QNW6, P62805, P49450, Q93077	0.401
629	6O1D	EM	3.40	2019-05-22	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_native	145	Cryo-EM structure of the centromeric nucleosome with native alpha satellite DNA	Zhou, B.R., Yadav, K.N.S., Borgnia, M., Hong, J., Cao, B., Olins, A.L., Olins, D.E., Bai, Y., Zhang, P.	10.1038/s41467-019-10247-4	31127102	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P62805, P06899, P04908, P49450	0.482
630	6SE0	EM	3.80	2019-08-14	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Class 1 : CENP-A nucleosome	Ali-Ahmad, A., Bilokapic, S., Schafer, I.B., Halic, M., Sekulic, N.	10.15252/embr.201948913	31475439	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P62805, Q6FI13, P62807, P49450	0.328
631	6SE6	EM	3.50	2019-08-14	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Class2 : CENP-A nucleosome in complex with CENP-C central region	Ali-Ahmad, A., Bilokapic, S., Schafer, I.B., Halic, M., Sekulic, N.	10.15252/embr.201948913	31475439	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	Centromere protein C	Kinetochore, Centromere-associated, Nuclear division, CENP-A NAC/CAD	Q03188	P62805, Q6FI13, P62807, P49450	0.416
632	6SEE	EM	4.20	2019-08-14	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Class2A : CENP-A nucleosome in complex with CENP-C central region	Ali-Ahmad, A., Bilokapic, S., Schafer, I.B., Halic, M., Sekulic, N.	10.15252/embr.201948913	31475439	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	Centromere protein C	Kinetochore, Centromere-associated, Nuclear division, CENP-A NAC/CAD	Q03188	P62805, Q6FI13, P62807, P49450	0.309
633	6SEF	EM	3.70	2019-08-14	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Class2C : CENP-A nucleosome in complex with CENP-C central region	Ali-Ahmad, A., Bilokapic, S., Schafer, I.B., Halic, M., Sekulic, N.	10.15252/embr.201948913	31475439	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019	Centromere protein C	Kinetochore, Centromere-associated, Nuclear division, CENP-A NAC/CAD	Q03188	P62805, Q6FI13, P62807, P49450	0.372
634	6SEG	EM	3.10	2019-08-14	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		601	145	Class1: CENP-A nucleosome in complex with CENP-C central region	Ali-Ahmad, A., Bilokapic, S., Schafer, I.B., Halic, M., Sekulic, N.	10.15252/embr.201948913	31475439	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2019				P62805, Q6FI13, P62807, P49450	0.512
635	6TEM	EM	3.90	2020-04-08	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		601	130	CENP-A nucleosome core particle with 145 base pairs of the Widom 601 sequence by cryo-EM	Boopathi, R., Danev, R., Khoshouei, M., Kale, S., Nahata, S., Ramos, L., Angelov, D., Dimitrov, S., Hamiche, A., Petosa, C., Bednar, J.	10.1093/nar/gkaa246	32313946	Homo sapiens	Xenopus laevis	Xenopus laevis	Xenopus laevis		2020				P02281, P62799, P06897, P49450	-
636	7D20	EM	3.00	2021-02-10	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		601	136	Cryo-EM structure of SET8-CENP-A-nucleosome complex	Ho, C.H., Takizawa, Y., Kobayashi, W., Arimura, Y., Kimura, H., Kurumizaka, H.	10.26508/lsa.202000919	33574035	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2021	Isoform 2 of N-lysine methyltransferase KMT5A	Histone_methylation_H4K20_writer, Heterochromatin-associated, Transcription-associated, Nuclear division, Histone PTM writers	Q9NQR1	P62805, P06899, P04908, P49450	0.446
637	7PII	EM	2.68	2022-05-25	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B			122	Structure of the human CCAN CENP-A alpha-satellite complex	Yatskevich, S., Muir, K.W., Bellini, D., Zhang, Z., Yang, J., Tischer, T., Predin, M., Dendooven, T., McLaughlin, S.H., Barford, D.	10.1126/science.abn3810	35420891	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Centromere protein C	Kinetochore, Centromere-associated, Nuclear division, CENP-A NAC/CAD	Q03188	P62805, P62807, P49450, Q93077	0.573
638	7R5R	EM	2.44	2022-04-27	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B			133	Structure of the human CCAN CENP-A alpha-satellite complex	Yatskevich, S., Muir, K.W., Bellini, D., Zhang, Z., Yang, J., Tischer, T., Predin, M., Dendooven, T., McLaughlin, S.H., Barford, D.	10.1126/science.abn3810	35420891	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Centromere protein C	Kinetochore, Centromere-associated, Nuclear division, CENP-A NAC/CAD	Q03188	P62805, P62807, P49450, Q93077	0.571
639	7U46	EM	2.68	2022-03-16	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	Cryo-EM structure of CENP-A nucleosome (palindromic alpha satellite DNA) in complex with CENP-N	Zhou, K., Gebala, M., Woods, D., Sundararajan, K., Edwards, G., Krzizike, D., Wereszczynski, J., Straight, A.F., Luger, K.	10.1038/s41594-022-00758-y	35422519	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Centromere protein N	Kinetochore, Centromere-associated, Nuclear division, CENP-A NAC/CAD	Q96H22	P62805, P62807, P49450, Q93077	0.559
640	7U47	EM	7.50	2022-03-16	octamer, octamer	2	cenH3	canonical_H4	canonical_H2A	canonical_H2B		alphasat_147	145	CryoEM structure of CENP-N promoted nucleosome stacks with CENP-A and palindromic alpha satellite DNA sequence	Zhou, K., Gebala, M., Woods, D., Sundararajan, K., Edwards, G., Krzizike, D., Wereszczynski, J., Straight, A.F., Luger, K.	10.1038/s41594-022-00758-y	35422519	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Centromere protein N	Kinetochore, Centromere-associated, Nuclear division, CENP-A NAC/CAD	Q96H22	P62805, P62807, P49450, Q93077	0.179
641	7U4D	EM	8.10	2022-03-30	octamer, octamer	2	cenH3	canonical_H4	canonical_H2A	canonical_H2B		601	139	CryoEM structure of CENP-N promoted nucleosome stacks with CENP-A and 601 DNA sequence	Zhou, K., Gebala, M., Woods, D., Sundararajan, K., Edwards, G., Krzizike, D., Wereszczynski, J., Straight, A.F., Luger, K.	10.1038/s41594-022-00758-y	35422519	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Centromere protein N	Kinetochore, Centromere-associated, Nuclear division, CENP-A NAC/CAD	Q96H22	P62805, P62807, P49450, Q93077	0.114
642	7YWX	EM	12.00	2022-05-18	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B			162	Structure of the human CCAN CENP-A alpha-satellite complex	Yatskevich, S., Muir, K.W., Bellini, D., Zhang, Z., Yang, J., Tischer, T., Predin, M., Dendooven, T., McLaughlin, S.H., Barford, D.	10.1126/science.abn3810	35420891	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Centromere protein H, Centromere protein I, Centromere protein K, Centromere protein L, Centromere protein M, Centromere protein N, Centromere protein O, Centromere protein P, Centromere protein Q, Centromere protein R, Centromere protein S, Centromere protein T, Centromere protein U, Centromere protein W, Centromere protein X, Centromere protein C	Kinetochore, DNA repair, Fanconi anemia core complex, CENP-A NAC/CAD, Transcription-associated, Centromere-associated, Nuclear division	Q9H3R5, Q92674, Q9BS16, Q8N0S6, Q9NSP4, Q96H22, Q9BU64, Q6IPU0, Q7L2Z9, Q13352, Q8N2Z9, Q96BT3, Q71F23, Q5EE01, A8MT69, Q03188	P62805, P62807, P49450, Q93077	0.054
643	7YYH	EM	8.90	2022-05-18	octamer	1	cenH3	canonical_H4	canonical_H2A	canonical_H2B			153	Structure of the human CCANdeltaT CENP-A alpha-satellite complex	Yatskevich, S., Muir, K.W., Bellini, D., Zhang, Z., Yang, J., Tischer, T., Predin, M., Dendooven, T., McLaughlin, S.H., Barford, D.	10.1126/science.abn3810	35420891	Homo sapiens	Homo sapiens	Homo sapiens	Homo sapiens		2022	Centromere protein H, Centromere protein I, Centromere protein K, Centromere protein L, Centromere protein M, Centromere protein N, Centromere protein O, Centromere protein P, Centromere protein Q, Centromere protein R, Centromere protein U, Centromere protein C	Kinetochore, CENP-A NAC/CAD, Transcription-associated, Centromere-associated, Nuclear division	Q9H3R5, Q92674, Q9BS16, Q8N0S6, Q9NSP4, Q96H22, Q9BU64, Q6IPU0, Q7L2Z9, Q13352, Q71F23, Q03188	P62805, P62807, P49450, Q93077	0.075

List of all Nucleosome-containing structures: