8PP7

human RYBP-PRC1 bound to mononucleosome

Exp. Method EM
Resolution, Å 2.91
Release Date 2024-03-27
Update Date 2024-04-03
Authors Ciapponi, M., Karlukova, E., Schkolziger, S., Benda, C., Muller, J.
Publication PMID: 38528151
doi 10.1038/s41594-024-01258-x
RCSB PDB 8PP7
EMDB EMD-17797
Q-score 0.511
Core histones in Nucleosome-like particles:
Side Chain HistoneDB Variant Taxa UID
H3 Proximal E canonical H3 Drosophila melanogaster A0A7L0PXJ3
Distal A canonical H3 Drosophila melanogaster A0A7L0PXJ3
H4 Proximal F canonical H4 Drosophila melanogaster A0A0B4KFZ9
Distal B canonical H4 Drosophila melanogaster A0A0B4KFZ9
H2A Proximal G canonical H2A Drosophila melanogaster P84051
Distal C canonical H2A Drosophila melanogaster P84051
H2B Proximal H canonical H2B Drosophila melanogaster P02283
Distal D canonical H2B Drosophila melanogaster P02283
Other proteins:
Chain Name UID
K Polycomb complex protein BMI-1 P35226
L E3 ubiquitin-protein ligase RING2 Q99496
M Polycomb complex protein BMI-1 P35226
N E3 ubiquitin-protein ligase RING2 Q99496
DNA:
Chain Variant Length
I 601 153
J 601 153

H3

H4

H2A

H2B

DNA

Other


Chain Bfactor Q-score

Aligned nucleosome coordinates

Nucleosome reference frame definition

DNA relative twist and local base step parameters

Sequence on X-axis is numbered relative to the dyad base pair.

Atomic contacts between nucleosomal entities.


Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.