NucleosomeDB 8PKJ

Exp. Method	EM
Resolution, Å	2.5
Release Date	2024-02-28
Update Date	2024-03-06
Authors	Kobayashi, W., Sappler, A.H., Bollschweiler, D., Kummecke, M., Basquin, J., Arslantas, E.N., Ruangroengkulrith, S., Hornberger, R., Duderstadt, K., Tachibana, K.
Publication	PMID: 38409506
doi	10.1038/s41594-024-01239-0
RCSB PDB	8PKJ
EMDB	EMD-17741
Q-score	0.6

	Side	Chain	HistoneDB Variant	Taxa	UID
H3	Proximal	A	H3.3	Mus musculus	A0A7L1D652
H3	Distal	E	H3.3	Mus musculus	A0A7L1D652
H4	Proximal	B	canonical H4	Mus musculus	A0A3Q2Z0K7
H4	Distal	F	canonical H4	Mus musculus	A0A3Q2Z0K7
H2A	Proximal	C	canonical H2A	Mus musculus	B2RVF0
H2A	Distal	G	canonical H2A	Mus musculus	B2RVF0
H2B	Proximal	D	canonical H2B	Mus musculus	A0A2J8S4Y0
H2B	Distal	H	canonical H2B	Mus musculus	A0A2J8S4Y0

Chain	Variant	Length
I	601	146
J	601	146

H2A

H2B

DNA

Other

Orthographic Superimpose 1KX5 Show axes

X - Y

X - Z

Z - Y

3DNA

Relative Twist

Sequence on X-axis is numbered relative to the dyad base pair.

H3p chain A

H4p chain B

H2Ap chain C

H2Bp chain D

H3d chain E

H4d chain F

H2Ad chain G

H2Bd chain H

DNA top chain I, bot chain J

Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.

8PKJ