NucleosomeDB 8OF4

Exp. Method	EM
Resolution, Å	2.94
Release Date	2023-08-09
Update Date	2024-03-13
Authors	Smirnova, E., Bignon, E., Schultz, P., Papai, G., Ben Shem, A.
doi	10.7554/eLife.87989
Publication	PMID: 38415718
Related structures
RCSB PDB	8OF4
EMDB	EMD-16845
Q-score	0.446

	Side	Chain	HistoneDB Variant	Taxa	UID
H3	Proximal	A	canonical H3	Xenopus laevis	P84233
H3	Distal	E	canonical H3	Xenopus laevis	P84233
H4	Proximal	B	canonical H4	Xenopus laevis	P62799
H4	Distal	F	canonical H4	Xenopus laevis	P62799
H2A	Proximal	C	canonical H2A	Xenopus laevis	P06897
H2A	Distal	G	canonical H2A	Xenopus laevis	P06897
H2B	Proximal	D	canonical H2B	Xenopus laevis	P02281
H2B	Distal	H	canonical H2B	Xenopus laevis	P02281

Chain	Name	UID
L	NAD-dependent protein deacylase sirtuin-6	Q8N6T7

Chain	Variant	Length
I	601	145
J	601	145

H2A

H2B

DNA

Other

Orthographic Superimpose 1KX5 Show axes

X - Y

X - Z

Z - Y

3DNA

Relative Twist

Sequence on X-axis is numbered relative to the dyad base pair.

H3p chain A

H4p chain B

H2Ap chain C

H2Bp chain D

H3d chain E

H4d chain F

H2Ad chain G

H2Bd chain H

DNA top chain I, bot chain J

Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.

8OF4