NucleosomeDB 8IHM

Exp. Method	EM
Resolution, Å	3.58
Release Date	2024-03-20
Update Date	2024-03-20
Authors	Zhang, Y., Xu, M., Wang, P., Zhou, J., Wang, G., Han, S., Cai, G., Wang, X.
Publication	PMID: 37845487
doi	10.1038/s41422-023-00884-2
RCSB PDB	8IHM
EMDB	EMD-35449
Q-score	0.434

	Side	Chain	HistoneDB Variant	Taxa	UID
H3	Proximal	A	canonical H3	Xenopus laevis	A0A310TTQ1
H3	Distal	E	canonical H3	Xenopus laevis	A0A310TTQ1
H4	Proximal	B	canonical H4	Xenopus laevis	A0A8J1LTD2
H4	Distal	F	canonical H4	Xenopus laevis	A0A8J1LTD2
H2A	Proximal	C	canonical H2A	Xenopus laevis	Q6AZJ8
H2A	Distal	G	canonical H2A	Xenopus laevis	Q6AZJ8
H2B	Proximal	D	canonical H2B	Xenopus laevis	A0A8J0U496
H2B	Distal	H	canonical H2B	Xenopus laevis	A0A8J0U496

Chain	Name	UID
M	Rco1-ABR	NA
N	Chromatin modification-related protein EAF3	A0A8H4F719

Chain	Variant	Length
I	601	158
J	601	159

H2A

H2B

DNA

Other

Orthographic Superimpose 1KX5 Show axes

X - Y

X - Z

Z - Y

3DNA

Relative Twist

Sequence on X-axis is numbered relative to the dyad base pair.

H3p chain A

H4p chain B

H2Ap chain C

H2Bp chain D

H3d chain E

H4d chain F

H2Ad chain G

H2Bd chain H

DNA top chain I, bot chain J

Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.

8IHM