NucleosomeDB 8GPN

Exp. Method	EM
Resolution, Å	3.2
Release Date	2023-02-15
Update Date	2023-03-01
Authors	Lin, J., Wu, Y., Tian, G., Yu, D., Yang, E., Lam, W.H., Liu, Z., Jing, Y., Dang, S., Bao, X., Wong, J.W.H., Zhai, Y., Li, X.D.
Publication	PMID: 36795828
doi	10.1126/science.adc9318
RCSB PDB	8GPN
EMDB	EMD-34195
Q-score	0.459

	Side	Chain	HistoneDB Variant	Taxa	UID
H3	Proximal	A	canonical H3	Xenopus laevis	P84233
H3	Distal	E	canonical H3	Xenopus laevis	P84233
H4	Proximal	B	canonical H4	Xenopus laevis	P62799
H4	Distal	F	canonical H4	Xenopus laevis	P62799
H2A	Proximal	C	H2A.X	Xenopus laevis	P06897
H2A	Distal	G	H2A.X	Xenopus laevis	P06897
H2B	Proximal	D	canonical H2B	Xenopus laevis	P02281
H2B	Distal	H	canonical H2B	Xenopus laevis	P02281

Chain	Name	UID
K	Isoform 2 of Menin	O00255

Chain	Variant	Length
I	601	146
J	601	146

H2A

H2B

DNA

Other

Orthographic Superimpose 1KX5 Show axes

X - Y

X - Z

Z - Y

3DNA

Relative Twist

Sequence on X-axis is numbered relative to the dyad base pair.

H3p chain A

H4p chain B

H2Ap chain C

H2Bp chain D

H3d chain E

H4d chain F

H2Ad chain G

H2Bd chain H

DNA top chain I, bot chain J

Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.

8GPN