NucleosomeDB 8G88

Exp. Method	EM
Resolution, Å	2.3
Release Date	2023-03-22
Update Date	2024-06-19
Authors	Sinha, K.K., Bilokapic, S., Du, Y., Malik, D., Halic, M.
doi	10.1038/s41586-023-06112-6
Publication	PMID: 37225990
Related structures	8G86, 8G87, 8G8B, 8G8E, 8G8G
RCSB PDB	8G88
EMDB	EMD-29843
Q-score	0.199

	Side	Chain	HistoneDB Variant	Taxa	UID
H3	Proximal	A	canonical H3	Xenopus laevis	P84233
H3	Distal	E	canonical H3	Xenopus laevis	P84233
H4	Proximal	B	canonical H4	Xenopus laevis	P62799
H4	Distal	F	canonical H4	Xenopus laevis	P62799
H2A	Proximal	C	canonical H2A	Xenopus laevis	Q6AZJ8
H2A	Distal	G	canonical H2A	Xenopus laevis	Q6AZJ8
H2B	Proximal	D	canonical H2B	Xenopus laevis	P02281
H2B	Distal	H	canonical H2B	Xenopus laevis	P02281

Chain	Name	UID
X	POU domain, class 5, transcription factor 1	Q01860

Chain	Variant	Length
I	None	168
J	None	168

H2A

H2B

DNA

Other

Orthographic Superimpose 1KX5 Show axes

X - Y

X - Z

Z - Y

3DNA

Relative Twist

Sequence on X-axis is numbered relative to the dyad base pair.

H3p chain A

H4p chain B

H2Ap chain C

H2Bp chain D

H3d chain E

H4d chain F

H2Ad chain G

H2Bd chain H

DNA top chain I, bot chain J

Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.

8G88