8G6G

H2BK120ub+H3K79me2-modified nucleosome ubiquitin position 5

Exp. Method EM
Resolution, Å 2.93
Release Date 2024-02-21
Update Date 2024-02-21
Authors Hicks, C.W., Rahman, S., Fields, J.K., Morgan, M.T., Wolberger, C.
Publication PMID:
doi
RCSB PDB 8G6G
EMDB EMD-29767
Q-score 0.575
Core histones in Nucleosome-like particles:
Side Chain HistoneDB Variant Taxa UID
H3 Proximal A canonical H3 Xenopus laevis A0A310TTQ1
Distal E canonical H3 Xenopus laevis A0A310TTQ1
H4 Proximal B canonical H4 Xenopus laevis P62799
Distal F canonical H4 Xenopus laevis P62799
H2A Proximal C canonical H2A Xenopus laevis Q6AZJ8
Distal G canonical H2A Xenopus laevis Q6AZJ8
H2B Proximal D canonical H2B Xenopus laevis P02281
Distal H canonical H2B Xenopus laevis P02281
Other proteins:
Chain Name UID
K Ubiquitin P0CG47
DNA:
Chain Variant Length
I 601 157
J 601 157

H3

H4

H2A

H2B

DNA

Other


Aligned nucleosome coordinates

Nucleosome reference frame definition

DNA relative twist and local base step parameters

Sequence on X-axis is numbered relative to the dyad base pair.

Atomic contacts between nucleosomal entities.


Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.