8EVH

CX3CR1 nucleosome and wild type PU.1 complex

Exp. Method EM
Resolution, Å 2.85
Release Date 2023-11-01
Update Date 2024-10-16
Authors Lian, T., Guan, R., Zhou, B.R., Bai, Y.
doi 10.1038/s41594-023-01189-z
Publication PMID: 38267599
Related structures
RCSB PDB 8EVH
EMDB EMD-28629
Q-score 0.509
Core histones in Nucleosome-like particles:
Side Chain HistoneDB Variant Taxa UID
H3 Proximal E canonical H3 Homo sapiens P68431
Distal A canonical H3 Homo sapiens P68431
H4 Proximal F canonical H4 Homo sapiens P62805
Distal B canonical H4 Homo sapiens P62805
H2A Proximal G canonical H2A Homo sapiens Q16777
Distal C canonical H2A Homo sapiens Q16777
H2B Proximal H canonical H2B Homo sapiens Q16778
Distal D canonical H2B Homo sapiens Q16778
Other proteins:
Chain Name UID
M Single-chain variable fragment NA
N Single-chain variable fragment NA
O Transcription factor PU.1 P17433
DNA:
Chain Variant Length
I None 141
J None 141

H3

H4

H2A

H2B

DNA

Other


Aligned nucleosome coordinates

Nucleosome reference frame definition

DNA relative twist and local base step parameters

Sequence on X-axis is numbered relative to the dyad base pair.

Atomic contacts between nucleosomal entities.


Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.