7XX6

Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169a DNA fragment)

Exp. Method X-ray
Resolution, Å 3.39
Release Date 2023-05-31
Update Date 2023-11-29
Authors Adhireksan, Z., Qiuye, B., Lee, P.L., Sharma, D., Padavattan, S., Davey, C.A.
Publication PMID:
doi
RCSB PDB 7XX6
Core histones in Nucleosome-like particles:
Side Chain HistoneDB Variant Taxa UID
H3 Proximal A canonical H3 Homo sapiens P68431
Distal E canonical H3 Homo sapiens P68431
H4 Proximal B canonical H4 Homo sapiens P62805
Distal F canonical H4 Homo sapiens P62805
H2A Proximal C canonical H2A Homo sapiens P04908
Distal G canonical H2A Homo sapiens P04908
H2B Proximal D canonical H2B Homo sapiens P06899
Distal H canonical H2B Homo sapiens P06899
H1:
Chain HistoneDB Variant UID
o H1.0 P07305
p H1.0 P07305
DNA:
Chain Variant Length
I 601L 169
J 601L 169
S 601L 169
T 601L 169
c 601L 169
d 601L 169
m 601L 169
n 601L 169

H3

H4

H2A

H2B

H1

DNA

Other


Chain Bfactor

Aligned nucleosome coordinates

Nucleosome reference frame definition

DNA relative twist and local base step parameters

Sequence on X-axis is numbered relative to the dyad base pair.

Atomic contacts between nucleosomal entities.


Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.