NucleosomeDB 7VDT

Exp. Method	EM
Resolution, Å	2.8
Release Date	2022-05-18
Update Date	2022-05-18
Authors	Yuan, J.J., Chen, K.J., Zhang, W.B., Chen, Z.C.
Publication	PMID: 35477757
doi	10.1038/s41586-022-04658-5
RCSB PDB	7VDT
EMDB	EMD-31925
Q-score	0.549

	Side	Chain	HistoneDB Variant	Taxa	UID
H3	Proximal	E	canonical H3	Xenopus laevis	P84233
H3	Distal	K	canonical H3	Xenopus laevis	P84233
H4	Proximal	F	canonical H4	Xenopus laevis	P62799
H4	Distal	B	canonical H4	Xenopus laevis	P62799
H2A	Proximal	G	canonical H2A	Xenopus laevis	P06897
H2A	Distal	C	canonical H2A	Xenopus laevis	P06897
H2B	Proximal	H	canonical H2B	Xenopus laevis	P02281
H2B	Distal	D	canonical H2B	Xenopus laevis	P02281

Chain	Name	UID
A	Isoform 2 of Transcription activator BRG1	P51532

Chain	Variant	Length
I	601	135
J	601	137

H2A

H2B

DNA

Other

Orthographic Superimpose 1KX5 Show axes

X - Y

X - Z

Z - Y

3DNA

Relative Twist

Sequence on X-axis is numbered relative to the dyad base pair.

H4d chain B

H2Ad chain C

H2Bd chain D

H3p chain E

H4p chain F

H2Ap chain G

H2Bp chain H

H3d chain K

DNA top chain I, bot chain J

Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.

7VDT