7PET

The 4x177 nucleosome array containing H1

Exp. Method EM
Resolution, Å 9.5
Release Date 2022-08-03
Update Date 2022-08-03
Authors Dombrowski, M., Engeholm, M., Dienemann, C., Dodonova, S., Cramer, P.
Publication PMID: 35581345
doi 10.1038/s41594-022-00768-w
RCSB PDB 7PET
EMDB EMD-13356
Q-score 0.105
Core histones in Nucleosome-like particles:
Side Chain HistoneDB Variant Taxa UID
H3 Proximal A canonical H3 Homo sapiens Q71DI3
Distal E canonical H3 Homo sapiens Q71DI3
H4 Proximal B canonical H4 Homo sapiens P62805
Distal F canonical H4 Homo sapiens P62805
H2A Proximal C canonical H2A Homo sapiens P04908
Distal G canonical H2A Homo sapiens P04908
H2B Proximal D canonical H2B Homo sapiens O60814
Distal H canonical H2B Homo sapiens O60814
H1:
Chain HistoneDB Variant UID
s H1.4 P10412
u H1.4 P10412
DNA:
Chain Variant Length
I 601 698
J 601 698

H3

H4

H2A

H2B

H1

DNA

Other


Chain Bfactor Q-score

Aligned nucleosome coordinates

Nucleosome reference frame definition

DNA relative twist and local base step parameters

Sequence on X-axis is numbered relative to the dyad base pair.

Atomic contacts between nucleosomal entities.


Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.