7E9F

Cryo-EM structure of the 2:1 Orc1 BAH domain in complex with nucleosome

Exp. Method EM
Resolution, Å 4
Release Date 2022-09-07
Update Date 2022-09-07
Authors Jiang, H., Yu, C., Liu, C.P., Han, X., Yu, Z., Xu, R.M.
Publication PMID:
doi
Related structures 7E9C
RCSB PDB 7E9F
EMDB EMD-31030
Q-score 0.319
Core histones in Nucleosome-like particles:
Side Chain HistoneDB Variant Taxa UID
H3 Proximal E canonical H3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) P61830
Distal A canonical H3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) P61830
H4 Proximal F canonical H4 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) P02309
Distal B canonical H4 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) P02309
H2A Proximal G H2A.X Saccharomyces cerevisiae (strain ATCC 204508 / S288c) P04912
Distal C H2A.X Saccharomyces cerevisiae (strain ATCC 204508 / S288c) P04912
H2B Proximal H canonical H2B Saccharomyces cerevisiae (strain ATCC 204508 / S288c) P02294
Distal D canonical H2B Saccharomyces cerevisiae (strain ATCC 204508 / S288c) P02294
Other proteins:
Chain Name UID
K Origin recognition complex subunit 1 P54784
L Origin recognition complex subunit 1 P54784
DNA:
Chain Variant Length
I 601 123
J 601 126

H3

H4

H2A

H2B

DNA

Other


Chain Bfactor Q-score Local Resolution

Aligned nucleosome coordinates

Nucleosome reference frame definition

DNA relative twist and local base step parameters

Sequence on X-axis is numbered relative to the dyad base pair.

Atomic contacts between nucleosomal entities.


Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.