NucleosomeDB 7E8D

Exp. Method	EM
Resolution, Å	2.8
Release Date	2021-11-10
Update Date	2022-02-02
Authors	Sato, K., Kumar, A., Hamada, K., Okada, C., Oguni, A., Machiyama, A., Sakuraba, S., Nishizawa, T., Nureki, O., Kono, H., Ogata, K., Sengoku, T.
Publication	PMID: 34782608
doi	10.1038/s41467-021-26913-5
RCSB PDB	7E8D
EMDB	EMD-31015
Q-score	0.556

	Side	Chain	HistoneDB Variant	Taxa	UID
H3	Proximal	E	canonical H3	Homo sapiens	P68431
H3	Distal	A	canonical H3	Homo sapiens	P68431
H4	Proximal	F	canonical H4	Homo sapiens	P62805
H4	Distal	B	canonical H4	Homo sapiens	P62805
H2A	Proximal	G	canonical H2A	Homo sapiens	P0C0S8
H2A	Distal	C	canonical H2A	Homo sapiens	P0C0S8
H2B	Proximal	H	canonical H2B	Homo sapiens	P06899
H2B	Distal	D	canonical H2B	Homo sapiens	P06899

Chain	Name	UID
K	Histone-lysine N-methyltransferase NSD2	O96028

Chain	Variant	Length
I	601	172
J	601	172

H2A

H2B

DNA

Other

Orthographic Superimpose 1KX5 Show axes

X - Y

X - Z

Z - Y

3DNA

Relative Twist

Sequence on X-axis is numbered relative to the dyad base pair.

H3d chain A

H4d chain B

H2Ad chain C

H2Bd chain D

H3p chain E

H4p chain F

H2Ap chain G

H2Bp chain H

DNA top chain I, bot chain J

Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.

7E8D