NucleosomeDB 7D20

Exp. Method	EM
Resolution, Å	3
Release Date	2021-02-10
Update Date	2024-03-27
Authors	Ho, C.H., Takizawa, Y., Kobayashi, W., Arimura, Y., Kimura, H., Kurumizaka, H.
Publication	PMID: 33574035
doi	10.26508/lsa.202000919
RCSB PDB	7D20
EMDB	EMD-30552
Q-score	0.446

	Side	Chain	HistoneDB Variant	Taxa	UID
H3	Proximal	E	cenH3	Homo sapiens	P49450
H3	Distal	A	cenH3	Homo sapiens	P49450
H4	Proximal	B	canonical H4	Homo sapiens	P62805
H4	Distal	F	canonical H4	Homo sapiens	P62805
H2A	Proximal	C	canonical H2A	Homo sapiens	P04908
H2A	Distal	G	canonical H2A	Homo sapiens	P04908
H2B	Proximal	D	canonical H2B	Homo sapiens	P06899
H2B	Distal	H	canonical H2B	Homo sapiens	P06899

Chain	Name	UID
K	Isoform 2 of N-lysine methyltransferase KMT5A	Q9NQR1

Chain	Variant	Length
I	601	136
J	601	136

H2A

H2B

DNA

Other

Orthographic Superimpose 1KX5 Show axes

X - Y

X - Z

Z - Y

3DNA

Relative Twist

Sequence on X-axis is numbered relative to the dyad base pair.

H3d chain A

H4p chain B

H2Ap chain C

H2Bp chain D

H3p chain E

H4d chain F

H2Ad chain G

H2Bd chain H

DNA top chain I, bot chain J

Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.

7D20