NucleosomeDB 6Z6P

Exp. Method	EM
Resolution, Å	4.43
Release Date	2021-02-17
Update Date	2024-11-20
Authors	Lee, J.H., Bollschweiler, D., Schafer, T., Huber, R.
doi	10.1126/sciadv.abd4413
Publication	PMID: 33523989
Related structures
RCSB PDB	6Z6P
EMDB	EMD-11102
Q-score	0.189

	Side	Chain	HistoneDB Variant	Taxa	UID
H3	Proximal	A	canonical H3	Xenopus laevis	P84233
H3	Distal	E	canonical H3	Xenopus laevis	P84233
H4	Proximal	B	canonical H4	Xenopus laevis	P62799
H4	Distal	F	canonical H4	Xenopus laevis	P62799
H2A	Proximal	C	canonical H2A	Xenopus laevis	Q6AZJ8
H2A	Distal	G	canonical H2A	Xenopus laevis	P06897
H2B	Proximal	D	canonical H2B	Xenopus laevis	P02281
H2B	Distal	H	canonical H2B	Xenopus laevis	P02281

Chain	Name	UID
K	Histone deacetylase HDA1	P53973
L	Histone deacetylase HDA1	P53973
M	HDA1 complex subunit 3,HDA1 complex subunit 3	Q06623
N	HDA1 complex subunit 2	Q06629

Chain	Variant	Length
I	601	145
J	601	145

H2A

H2B

DNA

Other

Orthographic Superimpose 1KX5 Show axes

X - Y

X - Z

Z - Y

3DNA

Relative Twist

Sequence on X-axis is numbered relative to the dyad base pair.

H3p chain A

H4p chain B

H2Ap chain C

H2Bp chain D

H3d chain E

H4d chain F

H2Ad chain G

H2Bd chain H

DNA top chain I, bot chain J

Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.

6Z6P