NucleosomeDB 6T7D

Exp. Method	EM
Resolution, Å	4.4
Release Date	2020-04-29
Update Date	2020-05-13
Authors	Dodonova, S.O., Zhu, F., Dienemann, C., Taipale, J., Cramer, P.
Publication	PMID: 32350470
doi	10.1038/s41586-020-2195-y
RCSB PDB	6T7D
EMDB	EMD-10394
Q-score	0.323

	Side	Chain	HistoneDB Variant	Taxa	UID
H3	Proximal	A	canonical H3	Homo sapiens	Q71DI3
H3	Distal	E	canonical H3	Homo sapiens	Q71DI3
H4	Proximal	B	canonical H4	Homo sapiens	P62805
H4	Distal	F	canonical H4	Homo sapiens	P62805
H2A	Proximal	C	canonical H2A	Homo sapiens	P04908
H2A	Distal	G	canonical H2A	Homo sapiens	P04908
H2B	Proximal	D	canonical H2B	Homo sapiens	O60814
H2B	Distal	H	canonical H2B	Homo sapiens	O60814

Chain	Name	UID
K	Transcription factor SOX-11	P35716

Chain	Variant	Length
I	DNA-1	117
J	DNA-1	117

H2A

H2B

DNA

Other

Orthographic Superimpose 1KX5 Show axes

X - Y

X - Z

Z - Y

3DNA

Relative Twist

Sequence on X-axis is numbered relative to the dyad base pair.

H3p chain A

H4p chain B

H2Ap chain C

H2Bp chain D

H3d chain E

H4d chain F

H2Ad chain G

H2Bd chain H

DNA top chain I, bot chain J

Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.

6T7D