6RNY

PFV intasome - nucleosome strand transfer complex

Exp. Method EM
Resolution, Å 3.9
Release Date 2019-09-25
Update Date 2019-12-18
Authors Wilson, M.D., Renault, L., Maskell, D.P., Ghoneim, M., Pye, V.E., Nans, A., Rueda, D.S., Cherepanov, P., Costa, A.
Publication PMID: 31519882
doi 10.1038/s41467-019-12007-w
RCSB PDB 6RNY
EMDB EMD-4960
Q-score 0.349
Core histones in Nucleosome-like particles:
Side Chain HistoneDB Variant Taxa UID
H3 Proximal A H3.3 Homo sapiens P84243
Distal E H3.3 Homo sapiens P84243
H4 Proximal B canonical H4 Homo sapiens P62805
Distal F canonical H4 Homo sapiens P62805
H2A Proximal C canonical H2A Homo sapiens P0C0S8
Distal G canonical H2A Homo sapiens P0C0S8
H2B Proximal D canonical H2B Homo sapiens P62807
Distal H canonical H2B Homo sapiens P62807
Other proteins:
Chain Name UID
K Integrase P14350
L Integrase P14350
O Integrase P14350
P Integrase P14350
DNA:
Chain Variant Length
I Human-D02 128
J Human-D02 53
M None 18
Q None 18
T Human-D02 33
U Human-D02 108

H3

H4

H2A

H2B

DNA

Other


Aligned nucleosome coordinates

Nucleosome reference frame definition

DNA relative twist and local base step parameters

Sequence on X-axis is numbered relative to the dyad base pair.

Atomic contacts between nucleosomal entities.


Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.