6PX3

Set2 bound to nucleosome

Exp. Method EM
Resolution, Å 4.1
Release Date 2019-08-28
Update Date 2019-09-04
Authors Bilokapic, S., Halic, M.
Publication PMID: 31439846
doi 10.1038/s41467-019-11726-4
RCSB PDB 6PX3
EMDB EMD-20517
Q-score 0.261
Core histones in Nucleosome-like particles:
Side Chain HistoneDB Variant Taxa UID
H3 Proximal E canonical H3 Xenopus laevis P02302
Distal A canonical H3 Xenopus laevis P02302
H4 Proximal F canonical H4 Xenopus laevis P62799
Distal B canonical H4 Xenopus laevis P62799
H2A Proximal G canonical H2A Saccharomyces cerevisiae (strain ATCC 204508 / S288c) P0CH09
H2B Proximal H canonical H2B Xenopus laevis P02281
Other proteins:
Chain Name UID
C Ubiquitin-60S ribosomal protein L40,Histone H2A P0CH09
S Histone-lysine N-methyltransferase G0S676
DNA:
Chain Variant Length
I 601 145
J 601 145

H3

H4

H2A

H2B

DNA

Other


Aligned nucleosome coordinates

Nucleosome reference frame definition

DNA relative twist and local base step parameters

Sequence on X-axis is numbered relative to the dyad base pair.

Atomic contacts between nucleosomal entities.


Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.