6LA9

349 bp di-nucleosome harboring cohesive DNA termini assembled with linker histone H1.0 (high cryoprotectant)

Exp. Method X-ray
Resolution, Å 3.7
Release Date 2020-10-07
Update Date 2023-11-22
Authors Adhireksan, Z., Sharma, D., Lee, P.L., Davey, C.A.
Publication PMID: 32958761
doi 10.1038/s41467-020-18533-2
RCSB PDB 6LA9
Core histones in Nucleosome-like particles:
Side Chain HistoneDB Variant Taxa UID
H3 Proximal A canonical H3 Homo sapiens P68431
Distal E canonical H3 Homo sapiens P68431
H4 Proximal B canonical H4 Homo sapiens P62805
Distal F canonical H4 Homo sapiens P62805
H2A Proximal C canonical H2A Homo sapiens P04908
Distal G canonical H2A Homo sapiens P04908
H2B Proximal D canonical H2B Homo sapiens P06899
Distal H canonical H2B Homo sapiens P06899
H1:
Chain HistoneDB Variant UID
S H1.0 P07305
T H1.0 P07305
DNA:
Chain Variant Length
I 601_modified 349
J 601_modified 349

H3

H4

H2A

H2B

H1

DNA

Other


Chain Bfactor

Aligned nucleosome coordinates

Nucleosome reference frame definition

DNA relative twist and local base step parameters

Sequence on X-axis is numbered relative to the dyad base pair.

Atomic contacts between nucleosomal entities.


Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.