NucleosomeDB 5Z3V

Exp. Method	EM
Resolution, Å	4.22
Release Date	2019-05-22
Update Date	2024-03-27
Authors	Li, M., Xia, X., Tian, Y., Jia, Q., Liu, X., Lu, Y., Li, M., Li, X., Chen, Z.
Publication	PMID: 30867599
doi	10.1038/s41586-019-1029-2
RCSB PDB	5Z3V
EMDB	EMD-6883
Q-score	0.356

	Side	Chain	HistoneDB Variant	Taxa	UID
H3	Proximal	E	canonical H3	Xenopus laevis	P84233
H3	Distal	A	canonical H3	Xenopus laevis	P84233
H4	Proximal	F	canonical H4	Xenopus laevis	P62799
H4	Distal	B	canonical H4	Xenopus laevis	P62799
H2A	Proximal	G	canonical H2A	Xenopus laevis	Q6AZJ8
H2A	Distal	C	canonical H2A	Xenopus laevis	Q6AZJ8
H2B	Proximal	H	canonical H2B	Xenopus laevis	P02281
H2B	Distal	D	canonical H2B	Xenopus laevis	P02281

Chain	Name	UID
O	Transcription regulatory protein SNF2	P22082

Chain	Variant	Length
I	601	146
J	601	146

H2A

H2B

DNA

Other

Orthographic Superimpose 1KX5 Show axes

X - Y

X - Z

Z - Y

3DNA

Relative Twist

Sequence on X-axis is numbered relative to the dyad base pair.

H3d chain A

H4d chain B

H2Ad chain C

H2Bd chain D

H3p chain E

H4p chain F

H2Ap chain G

H2Bp chain H

DNA top chain I, bot chain J

Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.

5Z3V