5X0Y

Complex of Snf2-Nucleosome complex with Snf2 bound to SHL2 of the nucleosome

Exp. Method EM
Resolution, Å 4.69
Release Date 2017-04-19
Update Date 2024-03-27
Authors Liu, X., Li, M., Xia, X., Li, X., Chen, Z.
Publication PMID: 28424519
doi 10.1038/nature22036
Related structures 5X0X
RCSB PDB 5X0Y
EMDB EMD-6700
Q-score 0.315
Core histones in Nucleosome-like particles:
Side Chain HistoneDB Variant Taxa UID
H3 Proximal E canonical H3 Xenopus laevis P84233
Distal A canonical H3 Xenopus laevis P84233
H4 Proximal F canonical H4 Xenopus laevis P62799
Distal B canonical H4 Xenopus laevis P62799
H2A Proximal G canonical H2A Xenopus laevis P06897
Distal C canonical H2A Xenopus laevis P06897
H2B Proximal H canonical H2B Xenopus laevis P02281
Distal D canonical H2B Xenopus laevis P02281
Other proteins:
Chain Name UID
O Transcription regulatory protein SNF2 P22082
DNA:
Chain Variant Length
I 601 146
J 601 146

H3

H4

H2A

H2B

DNA

Other


Chain Bfactor Q-score

Aligned nucleosome coordinates

Nucleosome reference frame definition

DNA relative twist and local base step parameters

Sequence on X-axis is numbered relative to the dyad base pair.

Atomic contacts between nucleosomal entities.


Hover the mouse cursor on the barplot to show contact information. Oncogenic mutations of non-histone proteins in contact are highlighted.