0 |
7K6Q |
EM |
3.10 |
2021-02-10 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
146 |
Active state Dot1 bound to the H4K16ac nucleosome |
Valencia-Sanchez, M.I., De Ioannes, P., Wang, M., Truong, D.M., Lee, R., Armache, J.P., Boeke, J.D., Armache, K.J. |
10.1126/science.abc6663 |
33479126 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2021 |
Histone-lysine N-methyltransferase, H3 lysine-79 specific, Ubiquitin |
Ubiquitin, Telomere-associated, Histone PTM writers, Histone_methylation_H3K79_writer |
Q04089, P0CG48 |
P02281, P84233, P06897, P62799 |
0.489 |
1 |
6VEN |
EM |
3.37 |
2020-01-15 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
146 |
Yeast COMPASS in complex with a ubiquitinated nucleosome |
Worden, E.J., Zhang, X., Wolberger, C. |
10.7554/eLife.53199 |
31922488 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2020 |
Ubiquitin, COMPASS component SWD3, COMPASS component SWD1, Histone-lysine N-methyltransferase, H3 lysine-4 specific, COMPASS component BRE2, COMPASS component SDC1, COMPASS component SPP1 |
Telomere-associated, Histone PTM writers, Histone_methylation_H3K4_writer, COMPASS, Transcription-associated, Ubiquitin |
P0CG48, P38123, P39706, P38827, P43132, Q03323, Q03012 |
P02281, P84233, P06897, P62799 |
0.449 |
2 |
8T3T |
EM |
3.21 |
2023-10-18 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
146 |
Structure of Bre1-nucleosome complex - state3 |
Zhao, F., Hicks, C.W., Wolberger, C. |
10.1038/s41594-023-01137-x |
37872231 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
E3 ubiquitin-protein ligase BRE1 |
Telomere-associated, Histone PTM writers, Histone_ubiquitination_H2BK123_writer, E3 ubiquitin-protein ligation, Transcription-associated |
Q07457 |
P02281, P84233, P06897, P62799 |
0.535 |
3 |
8KD2 |
EM |
3.02 |
2023-09-13 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
174 |
Rpd3S in complex with 187bp nucleosome |
Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J. |
10.1038/s41422-023-00869-1 |
37666978 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
Histone deacetylase RPD3, Transcriptional regulatory protein SIN3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P32561, P22579, Q12432, Q04779 |
P02281, P84233, P06897, P62799 |
0.35 |
4 |
8OX1 |
EM |
2.70 |
2023-08-30 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
telomeric_human |
145 |
Structure of TRF1core in complex with telomeric nucleosome |
Hu, H., van Roon, A.M., Ghanim, G.E., Ahsan, B., Oluwole, A.O., Peak-Chew, S.Y., Robinson, C.V., Nguyen, T.H.D. |
10.1126/sciadv.adi4148 |
37624885 |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Xenopus laevis |
2023 |
Telomeric repeat-binding factor 1 |
DNA repair, Shelterin, Cell cycle, Telomere-associated |
P54274 |
P62807, P68431, Q93077, P62805 |
0.579 |
5 |
8T3W |
EM |
3.25 |
2023-10-18 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
146 |
Structure of Bre1-nucleosome complex - state2 |
Zhao, F., Hicks, C.W., Wolberger, C. |
10.1038/s41594-023-01137-x |
37872231 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
E3 ubiquitin-protein ligase BRE1 |
Telomere-associated, Histone PTM writers, Histone_ubiquitination_H2BK123_writer, E3 ubiquitin-protein ligation, Transcription-associated |
Q07457 |
P02281, P84233, P06897, P62799 |
0.52 |
6 |
8T3Y |
EM |
3.47 |
2023-10-18 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
146 |
Structure of Bre1-nucleosome complex - state1 |
Zhao, F., Hicks, C.W., Wolberger, C. |
10.1038/s41594-023-01137-x |
37872231 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
E3 ubiquitin-protein ligase BRE1 |
Telomere-associated, Histone PTM writers, Histone_ubiquitination_H2BK123_writer, E3 ubiquitin-protein ligation, Transcription-associated |
Q07457 |
P02281, P84233, P06897, P62799 |
0.503 |
7 |
8TOF |
EM |
2.80 |
2024-01-17 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601_modified |
176 |
Rpd3S bound to an H3K36Cme3 modified nucleosome |
Markert, J.W., Vos, S.M., Farnung, L. |
10.1038/s41467-023-43968-8 |
38065958 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2024 |
Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1, Rco1, histone N-terminal tail |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P22579, P32561, Q12432, Q04779 |
P02281, P06897, P02302, P62799 |
0.464 |
8 |
5KGF |
EM |
4.54 |
2016-07-27 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
145 |
Structural model of 53BP1 bound to a ubiquitylated and methylated nucleosome, at 4.5 A resolution |
Wilson, M.D., Benlekbir, S., Fradet-Turcotte, A., Sherker, A., Julien, J.P., McEwan, A., Noordermeer, S.M., Sicheri, F., Rubinstein, J.L., Durocher, D. |
10.1038/nature18951 |
27462807 |
Xenopus laevis |
Xenopus laevis |
Homo sapiens |
Homo sapiens |
Xenopus laevis |
2016 |
Tumor suppressor p53-binding protein 1, Ubiquitin |
Histone_ubiquitination_H2AK15_reader, Telomere-associated, Histone PTM readers, Ubiquitin, DNA repair, Histone_methylation_H4K20_reader |
Q12888, P0CG47 |
P0C0S8, P84233, P62807, P62799 |
0.301 |
9 |
6UGM |
EM |
3.70 |
2019-11-20 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
146 |
Structural basis of COMPASS eCM recognition of an unmodified nucleosome |
Hsu, P.L., Shi, H., Leonen, C., Kang, J., Chatterjee, C., Zheng, N. |
10.1016/j.molcel.2019.10.013 |
31733991 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2019 |
Swd3, Bre2, Histone-lysine N-methyltransferase, H3 lysine-4 specific, Swd1, Sdc1, H3 N-terminus, Spp1 |
Telomere-associated, Histone PTM writers, Histone_methylation_H3K4_writer, COMPASS, Euchromatin-associated, Transcription-associated |
Q6CLY5, Q6CTQ1, Q6CIT4, Q6CXF3, Q6CPN6, Q6CRQ4 |
Q92133, P02281, Q6AZJ8, P62799 |
0.385 |
10 |
6UH5 |
EM |
3.50 |
2019-11-20 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
146 |
Structural basis of COMPASS eCM recognition of the H2Bub nucleosome |
Hsu, P.L., Shi, H., Leonen, C., Kang, J., Chatterjee, C., Zheng, N. |
10.1016/j.molcel.2019.10.013 |
31733991 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2019 |
Swd3, Bre2, Histone-lysine N-methyltransferase, H3 lysine-4 specific, Swd1, Sdc1, Ubiquitin, Spp1 |
Telomere-associated, Histone PTM writers, Histone_methylation_H3K4_writer, COMPASS, Euchromatin-associated, Transcription-associated, Ubiquitin |
Q6CLY5, Q6CTQ1, Q6CIT4, Q6CXF3, Q6CPN6, P0CG47, Q6CRQ4 |
P84233, P62799, Q92133, P02281, Q6AZJ8 |
0.372 |
11 |
7YI5 |
EM |
3.96 |
2023-06-14 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
151 |
Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in loose state |
Guan, H., Wang, P., Zhang, P., Ruan, C., Ou, Y., Peng, B., Zheng, X., Lei, J., Li, B., Yan, C., Li, H. |
10.1038/s41586-023-06349-1 |
37468628 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P22579, P32561, Q12432, Q04779 |
P02281, P84233, P06897, P62799 |
0.254 |
12 |
8IEG |
EM |
3.44 |
2023-09-06 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
147 |
Bre1(mRBD-RING)/Rad6-Ub/nucleosome complex |
Deng, Z., Ai, H., Sun, M., Tong, Z., Du, Y., Qu, Q., Zhang, L., Xu, Z., Tao, S., Shi, Q., Li, J.B., Pan, M., Liu, L. |
10.1016/j.molcel.2023.08.001 |
37633270 |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Xenopus laevis |
2023 |
E3 ubiquitin-protein ligase BRE1, Ubiquitin-conjugating enzyme E2 2 |
Telomere-associated, Histone PTM writers, Histone_ubiquitination_H2BK123_writer, E3 ubiquitin-protein ligation, Transcription-associated, DNA repair |
Q07457, P06104 |
P62805, O60814, P04908, P68431 |
0.393 |
13 |
8KD6 |
EM |
3.07 |
2023-09-13 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
164 |
Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class3 |
Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J. |
10.1038/s41422-023-00869-1 |
37666978 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
Histone deacetylase RPD3, Transcriptional regulatory protein SIN3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P32561, P22579, Q12432, Q04779 |
P02281, P84233, P06897, P62799 |
0.311 |
14 |
7YQK |
EM |
3.38 |
2022-08-17 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
H2A.X |
canonical_H2B |
|
601 |
145 |
cryo-EM structure of gammaH2AXK15ub-H4K20me2 nucleosome bound to 53BP1 |
Ai, H., Chu, G.C., Gong, Q., Tong, Z.B., Deng, Z., Liu, X., Yang, F., Xu, Z., Li, J.B., Tian, C., Liu, L. |
10.1021/jacs.2c06156 |
36166692 |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Xenopus laevis |
2022 |
UDR motif of 53BP1, TP53-binding protein 1, Polyubiquitin-B |
Histone_ubiquitination_H2AK15_reader, Telomere-associated, Histone PTM readers, Ubiquitin, DNA repair, Histone_methylation_H4K20_reader |
Q12888, P0CG47 |
P16104, O60814, P68431, P62805 |
0.424 |
15 |
8KD4 |
EM |
2.93 |
2023-09-13 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
164 |
Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class1 |
Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J. |
10.1038/s41422-023-00869-1 |
37666978 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
Histone deacetylase RPD3, Transcriptional regulatory protein SIN3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P32561, P22579, Q12432, Q04779 |
P02281, P84233, P06897, P62799 |
0.373 |
16 |
7YI4 |
EM |
3.96 |
2023-06-14 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
151 |
Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in close state |
Guan, H., Wang, P., Zhang, P., Ruan, C., Ou, Y., Peng, B., Zheng, X., Lei, J., Li, B., Yan, C., Li, H. |
10.1038/s41586-023-06349-1 |
37468628 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P22579, P32561, Q12432, Q04779 |
P02281, P84233, P06897, P62799 |
0.23 |
17 |
8IHT |
EM |
3.72 |
2024-03-20 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
158 |
Rpd3S bound to the nucleosome |
Zhang, Y., Xu, M., Wang, P., Zhou, J., Wang, G., Han, S., Cai, G., Wang, X. |
10.1038/s41422-023-00884-2 |
37845487 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2024 |
Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, RCO1 isoform 1, Chromatin modification-related protein EAF3 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P22579, P32561, Q04779, Q12432 |
P02281, P84233, P06897, P62799 |
0.345 |
18 |
8JHO |
EM |
7.60 |
2023-09-27 |
octamer, octamer |
2 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
340 |
Cryo-EM structure of the histone deacetylase complex Rpd3S in complex with di-nucleosome |
Li, W., Cui, H., Lu, Z., Wang, H. |
10.1038/s41594-023-01121-5 |
37798513 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, Chromatin modification-related protein EAF3, RCO1 isoform 1 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P22579, P32561, Q12432, Q04779 |
P02281, P84233, P06897, P62799 |
0.067 |
19 |
8KD3 |
EM |
2.90 |
2023-09-13 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
164 |
Rpd3S in complex with nucleosome with H3K36MLA modification, H3K9Q mutation and 187bp DNA |
Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J. |
10.1038/s41422-023-00869-1 |
37666978 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
Histone deacetylase RPD3, Transcriptional regulatory protein SIN3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P32561, P22579, Q12432, Q04779 |
P02281, A0A310TTQ1, P62799, Q6AZJ8 |
0.376 |
20 |
8W9F |
EM |
4.40 |
2024-05-15 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
alphasat_147 |
147 |
Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 3 |
Wang, C., Chu, C., Guo, Z., Zhan, X. |
10.1126/sciadv.adk7678 |
38598631 |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Xenopus laevis |
2024 |
Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P22579, P32561, Q12432, Q04779 |
O60814, P68431, P04908, P62805 |
0.156 |
21 |
7K6P |
EM |
3.20 |
2021-02-10 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
146 |
Active state Dot1 bound to the unacetylated H4 nucleosome |
Valencia-Sanchez, M.I., De Ioannes, P., Wang, M., Truong, D.M., Lee, R., Armache, J.P., Boeke, J.D., Armache, K.J. |
10.1126/science.abc6663 |
33479126 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2021 |
Histone-lysine N-methyltransferase, H3 lysine-79 specific, Ubiquitin |
Ubiquitin, Telomere-associated, Histone PTM writers, Histone_methylation_H3K79_writer |
Q04089, P0CG48 |
P02281, P84233, P06897, P62799 |
0.473 |
22 |
8KD7 |
EM |
3.09 |
2023-09-13 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
152 |
Rpd3S in complex with nucleosome with H3K36MLA modification and 167bp DNA |
Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J. |
10.1038/s41422-023-00869-1 |
37666978 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
Histone deacetylase RPD3, Transcriptional regulatory protein SIN3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P32561, P22579, Q12432, Q04779 |
P02281, P84233, P06897, P62799 |
0.324 |
23 |
8W9E |
EM |
3.60 |
2024-05-15 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
alphasat_147 |
147 |
Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 2 |
Wang, C., Chu, C., Guo, Z., Zhan, X. |
10.1126/sciadv.adk7678 |
38598631 |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Xenopus laevis |
2024 |
Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P22579, P32561, Q12432, Q04779 |
O60814, P68431, P04908, P62805 |
0.188 |
24 |
8KD5 |
EM |
2.90 |
2023-09-13 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
160 |
Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class2 |
Dong, S., Li, H., Wang, M., Rasheed, N., Zou, B., Gao, X., Guan, J., Li, W., Zhang, J., Wang, C., Zhou, N., Shi, X., Li, M., Zhou, M., Huang, J., Li, H., Zhang, Y., Wong, K.H., Zhang, X., Chao, W.C.H., He, J. |
10.1038/s41422-023-00869-1 |
37666978 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
Histone deacetylase RPD3, Transcriptional regulatory protein SIN3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P32561, P22579, Q12432, Q04779 |
P02281, P84233, P06897, P62799 |
0.378 |
25 |
8W9D |
EM |
3.90 |
2024-05-15 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
alphasat_147 |
147 |
Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 1 |
Wang, C., Chu, C., Guo, Z., Zhan, X. |
10.1126/sciadv.adk7678 |
38598631 |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Xenopus laevis |
2024 |
Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1, Unclear peptide |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P22579, P32561, Q12432, Q04779 |
O60814, P68431, P04908, P62805 |
0.263 |
26 |
8HY0 |
EM |
3.10 |
2023-09-27 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
170 |
Composite cryo-EM structure of the histone deacetylase complex Rpd3S in complex with nucleosome |
Li, W., Cui, H., Lu, Z., Wang, H. |
10.1038/s41594-023-01121-5 |
37798513 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, Chromatin modification-related protein EAF3, RCO1 isoform 1 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P22579, P32561, Q12432, Q04779 |
P02281, P84233, P06897, P62799 |
0.463 |
27 |
8HXY |
EM |
3.10 |
2023-09-27 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
170 |
Cryo-EM structure of the histone deacetylase complex Rpd3S in complex with nucleosome |
Li, W., Cui, H., Lu, Z., Wang, H. |
10.1038/s41594-023-01121-5 |
37798513 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
Transcriptional regulatory protein SIN3, Histone deacetylase RPD3, Chromatin modification-related protein EAF3, Transcriptional regulatory protein RCO1 |
Telomere-associated, Histone PTM writers, NuA4, Cell cycle, Transcription-associated, Rpd3, Histone PTM erasers, Histone_acetylation_writer, Histone_deacetylation, DNA repair |
P22579, P32561, Q12432, Q04779 |
P02281, P84233, P06897, P62799 |
0.44 |