0 |
7XFH |
EM |
2.90 |
2023-04-19 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
132 |
Structure of nucleosome-AAG complex (A-30I, post-catalytic state) |
Zheng, L., Tsai, B., Gao, N. |
10.1038/s41421-023-00560-0 |
37339965 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
DNA-3-methyladenine glycosylase |
DNA repair, DNA modification |
P29372 |
P02281, P84233, P06897, P62799 |
0.515 |
1 |
6PA7 |
EM |
2.94 |
2020-06-17 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
166 |
The cryo-EM structure of the human DNMT3A2-DNMT3B3 complex bound to nucleosome. |
Xu, T.H., Liu, M., Zhou, X.E., Liang, G., Zhao, G., Xu, H.E., Melcher, K., Jones, P.A. |
10.1038/s41586-020-2747-1 |
32968275 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2020 |
DNA (cytosine-5)-methyltransferase 3A, DNA (cytosine-5)-methyltransferase 3B |
DNA modification, Transcription-associated |
Q9Y6K1, Q9UBC3 |
P02281, P84233, P06897, P62799 |
0.403 |
2 |
8VWV |
EM |
3.60 |
2024-10-30 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
146 |
OGG1 bound to a nucleosome containing 8oxoG at SHL4 (composite map) |
Cordero, C., Mehta, K.P.M., Weaver, T.M., Ling, J.A., Freudenthal, B.D., Cortez, D., Roberts, S.A. |
10.1038/s41467-024-55497-z |
39715760 |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Xenopus laevis |
2024 |
N-glycosylase/DNA lyase |
DNA repair, DNA modification |
O15527 |
P0C0S8, P62807, Q71DI3, P62805 |
0.359 |
3 |
9EOZ |
EM |
3.10 |
2024-11-06 |
octamer |
1 |
H3.3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
144 |
Human OGG1 bound to a nucleosome core particle with 8-oxodGuo lesion at SHL6.0 |
Ren, M., Gut, F., Fan, Y., Ma, J., Shan, X., Yikilmazsoy, A., Likhodeeva, M., Hopfner, K.P., Zhou, C. |
10.1038/s41467-024-53811-3 |
39477986 |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Xenopus laevis |
2024 |
N-glycosylase/DNA lyase |
DNA repair, DNA modification |
O15527 |
P62807, P84243, Q93077, P62805 |
0.465 |
4 |
7XFJ |
EM |
3.00 |
2023-11-08 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
131 |
Structure of nucleosome-AAG complex (T-50I, post-catalytic state) |
Zheng, L., Tsai, B., Gao, N. |
10.1038/s41421-023-00560-0 |
37339965 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
DNA-3-methyladenine glycosylase |
DNA repair, DNA modification |
P29372 |
P02281, P84233, P06897, P62799 |
0.466 |
5 |
8UW1 |
EM |
2.88 |
2024-09-11 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
146 |
Cryo-EM structure of DNMT3A1 UDR in complex with H2AK119Ub-nucleosome |
Gretarsson, K.H., Abini-Agbomson, S., Gloor, S.L., Weinberg, D.N., McCuiston, J.L., Kumary, V.U.S., Hickman, A.R., Sahu, V., Lee, R., Xu, X., Lipieta, N., Flashner, S., Adeleke, O.A., Popova, I.K., Taylor, H.F., Noll, K., Windham, C.L., Maryanski, D.N., Venters, B.J., Nakagawa, H., Keogh, M.C., Armache, K.J., Lu, C. |
10.1126/sciadv.adp0975 |
39196936 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2024 |
DNA (cytosine-5)-methyltransferase 3A |
DNA modification |
Q9Y6K1 |
P02281, P84233, P06897, A0A8J1LTD2 |
- |
6 |
7XFM |
EM |
3.10 |
2023-04-19 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
133 |
Structure of nucleosome-AAG complex (A-53I, post-catalytic state) |
Zheng, L., Tsai, B., Gao, N. |
10.1038/s41421-023-00560-0 |
37339965 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2023 |
DNA-3-methyladenine glycosylase |
DNA repair, DNA modification |
P29372 |
P02281, P84233, P06897, P62799 |
0.466 |
7 |
8QZM |
EM |
3.10 |
2024-10-23 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
145 |
Structure of DNMT3A1 UDR region bound to H2AK119ub nucleosome |
Wapenaar, H., Clifford, G., Rolls, W., Pasquier, M., Burdett, H., Zhang, Y., Deak, G., Zou, J., Spanos, C., Taylor, M.R.D., Mills, J., Watson, J.A., Kumar, D., Clark, R., Das, A., Valsakumar, D., Bramham, J., Voigt, P., Sproul, D., Wilson, M.D. |
10.1038/s44319-024-00306-3 |
39528729 |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Xenopus laevis |
2024 |
DNA (cytosine-5)-methyltransferase 3A |
DNA modification |
Q9Y6K1 |
A0A7K7T3V7, P62807, P0C0S8, P62805 |
0.506 |
8 |
8U5H |
EM |
3.23 |
2024-06-12 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
157 |
Cryo-EM structure of human DNMT3A UDR bound to H2AK119ub1-modified nucleosome |
Chen, X., Guo, Y., Zhao, T., Lu, J., Fang, J., Wang, Y., Wang, G.G., Song, J. |
10.1038/s41467-024-50526-3 |
39043678 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2024 |
DNA (cytosine-5)-methyltransferase 3A, Ubiquitin |
Ubiquitin, DNA modification |
Q9Y6K1, P0CG48 |
P02281, P06897, P02302, P62799 |
0.443 |
9 |
8VX6 |
EM |
3.20 |
2024-10-09 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
155 |
Human OGG1 bound at the nucleosomal DNA entry site |
You, Q., Feng, X., Cai, Y., Baylin, S.B., Li, H. |
10.1038/s42003-024-06919-7 |
39341999 |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
Xenopus laevis |
2024 |
N-glycosylase/DNA lyase |
DNA repair, DNA modification |
O15527 |
P02281, P84233, P06897, P62799 |
0.424 |
10 |
8VWT |
EM |
3.30 |
2024-10-30 |
octamer |
1 |
canonical_H3 |
canonical_H4 |
canonical_H2A |
canonical_H2B |
|
601 |
147 |
OGG1 bound to a nucleosome containing 8oxoG at SHL-6 (composite map) |
Cordero, C., Mehta, K.P.M., Weaver, T.M., Ling, J.A., Freudenthal, B.D., Cortez, D., Roberts, S.A. |
10.1038/s41467-024-55497-z |
39715760 |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Homo sapiens |
Xenopus laevis |
2024 |
N-glycosylase/DNA lyase |
DNA repair, DNA modification |
O15527 |
P0C0S8, P62807, Q71DI3, P62805 |
0.41 |